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Genomics-Based Systems and Multi-disciplinary Approaches to Unlock Complex Gene Networks Underlying Wood Formation
Current Forestry Reports ( IF 9.5 ) Pub Date : 2022-03-26 , DOI: 10.1007/s40725-022-00162-1
Anthony Piot 1, 2, 3 , Ilga Porth 1, 2, 3 , Yousry A. El-Kassaby 4
Affiliation  

Purpose of Review

Wood represents an important economic natural resource and the molecular regulatory mechanisms underlying its formation are best studied through biotechnological approaches, of which genomics forms an important branch. The evolution of technologies employed to examine wood formation at the molecular level has led to the development of novel methods in the field of wood genomics. The goal of this paper is to summarize the important advancements made in recent years to study wood genomics.

Recent Findings

Breakthroughs in sequencing technologies and the availability of additional assembled and functionally annotated plant genomes have broadened the scope of organisms for investigating the distinct wood formation patterns among seed plants. The study of non-coding RNAs and epigenetic interactions has become an important part of research on the expression regulation of genes implicated in wood formation. Systems genetics coupled with network graph theory have been used to integrate multiple layers of molecular data to study wood formation as a complex biological process. In terms of wood improvement, genomics-enabled breeding has produced similar or even better results compared to traditional selection approaches.

Summary

Over the past 5 years, the field of wood genomics has seen a shift to an increasingly holistic approach to help decipher wood formation as a complex biological process. In the future, the field of wood genomics will see major contributions from evolutionary developmental biology, epigenomics, and the study of additional interactions between biomolecules. The resulting knowledge will further improve genomic prediction models in support of tree germplasm enhancement.



中文翻译:

基于基因组学的系统和多学科方法来解锁木材形成的复杂基因网络

审查目的

木材是一种重要的经济自然资源,其形成背后的分子调控机制最好通过生物技术方法进行研究,其中基因组学是一个重要分支。用于在分子水平上检查木材形成的技术的发展导致了木材基因组学领域新方法的发展。本文的目的是总结近年来在木材基因组学研究方面取得的重要进展。

最近的发现

测序技术的突破以及额外组装和功能注释植物基因组的可用性扩大了生物体的范围,用于研究种子植物中不同的木材形成模式。非编码RNA和表观遗传相互作用的研究已成为木材形成相关基因表达调控研究的重要组成部分。系统遗传学与网络图论相结合已被用于整合多层分子数据,以研究木材形成作为一个复杂的生物过程。在木材改良方面,与传统选择方法相比,基因组学育种产生了相似甚至更好的结果。

概括

在过去的 5 年中,木材基因组学领域已经转向一种越来越全面的方法,以帮助将木材形成解读为一个复杂的生物过程。未来,木材基因组学领域将看到进化发育生物学、表观基因组学和生物分子之间额外相互作用研究的重大贡献。由此产生的知识将进一步改进基因组预测模型,以支持树种质的增强。

更新日期:2022-03-26
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