Development of a set of SNP markers for population genetics of the sea peach (Halocynthia papillosa),Conservation Genetics Resources

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Development of a set of SNP markers for population genetics of the sea peach (Halocynthia papillosa)
Conservation Genetics Resources ( IF 1.1 ) Pub Date : 2023-08-09 , DOI: 10.1007/s12686-023-01313-7
M. Padrón , M. Milhes , A. Delcamp , E. Guichoux , K. Guizien

A set of single nucleotide polymorphism (SNP) markers was developed from the transcriptome of the solitary ascidian Halocynthia papillosa. 1399 putative SNPs with coverage larger than 100 reads were identified, and a selected set of 320 SNPs was tested using a MassARRAY System on 95 samples from the NW Mediterranean. A total of 175 SNPs were successfully genotyped, polymorphic and in Hardy-Weinberg equilibrium over all samples, with significant linkage desequilibrium in only 8 pairs of SNPs. The newly developed loci will be a valuable tool for population genetics studies of this endemic ascidian species of the Mediterranean Sea.

更新日期：2023-08-10

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