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NOTCH3 p.Arg1231Cys is Markedly Enriched in South Asians and Associated with Stroke
medRxiv - Genetic and Genomic Medicine Pub Date : 2024-03-21 , DOI: 10.1101/2023.10.05.23296511
Juan L. Rodriguez-Flores , Shareef Khalid , Neelroop Parikshak , Asif Rasheed , Bin Ye , Manav Kapoor , Joshua Backman , Farshid Sepehrband , Silvio Alessandro DiGioia , Sahar Gelfman , Tanima De , Nilanjana Banerjee , Deepika Sharma , Hector Martinez , Sofia Castaneda , David D’Ambrosio , Xingmin A. Zhang , Pengcheng Xun , Ellen Tsai , I-Chun Tsai , Regeneron Genetics Center , Maleeha Zaman Khan , Muhammad Jahanzaib , Muhammad Rehan Mian , Muhammad Bilal Liaqat , Khalid Mahmood , Tanvir Us Salam , Muhammad Hussain , Javed Iqbal , Faizan Aslam , Michael N. Cantor , Gannie Tzoneva , John Overton , Jonathan Marchini , Jeff Reid , Aris Baras , Niek Verweij , Luca A. Lotta , Giovanni Coppola , Katia Karalis , Aris Economides , Sergio Fazio , Wolfgang Liedtke , John Danesh , Ayeesha Kamal , Philippe Frossard , Thomas Coleman , Alan R. Shuldiner , Danish Saleheen

The genetic factors of stroke in South Asians are largely unexplored. Exome-wide sequencing and association analysis (ExWAS) in 75 K Pakistanis identified NM_000435.3(NOTCH3):c.3691C>T, encoding the missense amino acid substitution p.Arg1231Cys, enriched in South Asians (alternate allele frequency = 0.58% compared to 0.019% in Western Europeans), and associated with subcortical hemorrhagic stroke [odds ratio (OR) = 3.39, 95% confidence interval (CI) = [2.26, 5.10], p value = 3.87x10-9), and all strokes (OR [CI] = 2.30 [3.01, 1.77], p value = 7.79x10-10). NOTCH3 p.Arg231Cys was strongly associated with white matter hyperintensity on MRI in United Kingdom Biobank (UKB) participants (effect [95% CI] in SD units = 1.1 [0.61, 1.5], p value = 3.0x10-6). The variant is attributable for approximately 5.5% of hemorrhagic strokes and 1% of all strokes in South Asians. These findings highlight the value of diversity in genetic studies and have major implications for genomic medicine and therapeutic development in South Asian populations.

中文翻译:

NOTCH3 p.Arg1231Cys 在南亚人中显着丰富并与中风相关

南亚人中风的遗传因素在很大程度上尚未被探索。在 75 K 巴基斯坦人中进行全外显子组测序和关联分析 (ExWAS),鉴定出 NM_000435.3( NOTCH3 ):c.3691C>T,编码错义氨基酸取代 p.Arg1231Cys,在南亚人中富集(替代等位基因频率 = 0.58%)西欧人为 0.019%),并且与皮质下出血性中风相关 [比值比 (OR) = 3.39,95% 置信区间 (CI) = [2.26, 5.10],p 值 = 3.87x10 -9),以及所有中风(或 [CI] = 2.30 [3.01, 1.77],p 值 = 7.79x10 -10 )。在英国生物银行 (UKB) 参与者中, NOTCH3 p.Arg231Cys 与 MRI 上的白质高信号密切相关(SD 单位中的效应 [95% CI] = 1.1 [0.61, 1.5],p 值 = 3.0x10 -6)。在南亚人中,大约 5.5% 的出血性中风和 1% 的中风是由这种变异引起的。这些发现凸显了遗传研究多样性的价值,并对南亚人群的基因组医学和治疗发展具有重大影响。
更新日期:2024-03-22
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