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Reporter cell lines to screen for inhibitors or regulators of the KRAS-RAF-MEK1/2-ERK1/2 pathway
Biochemical Journal ( IF 4.1 ) Pub Date : 2024-03-20 , DOI: 10.1042/bcj20240015
Laura Weatherdon 1 , Kate Stuart 2 , Megan A Cassidy 1 , Alberto Moreno de la Gándara 2 , Hanneke Okkenhaug 1 , Markus Muellener 2 , Grahame Mckenzie 2 , Simon J Cook 1 , Rebecca Gilley 1
Affiliation  

The RAS-regulated RAF–MEK1/2–ERK1/2 signalling pathway is activated in cancer due to mutations in RAS proteins (especially KRAS), BRAF, CRAF, MEK1 and MEK2. Whilst inhibitors of KRASG12C (lung adenocarcinoma) and BRAF and MEK1/2 (melanoma and colorectal cancer) are clinically approved, acquired resistance remains a problem. Consequently, the search for new inhibitors (especially of RAS proteins), new inhibitor modalities and regulators of this pathway, which may be new drug targets, continues and increasingly involves cell-based screens with small molecules or genetic screens such as RNAi, CRISPR or protein interference. Here we describe cell lines that exhibit doxycycline-dependent expression KRASG12V or BRAFV600E and harbour a stably integrated EGR1:EmGFP reporter gene that can be detected by flow cytometry, high-content microscopy or immunoblotting. KRASG12V or BRAFV600E-driven EmGFP expression is inhibited by MEK1/2 or ERK1/2 inhibitors (MEKi and ERKi). BRAFi inhibit BRAFV600E-driven EmGFP expression but enhance the response to KRASG12V, recapitulating paradoxical activation of wild type RAF proteins. In addition to small molecules, expression of iDab6, encoding a RAS-specific antibody fragment inhibited KRASG12V- but not BRAFV600E-driven EmGFP expression. Finally, substitution of EmGFP for a bacterial nitroreductase gene allowed KRASG12V or BRAFV600E to drive cell death in the presence of a pro-drug, which may allow selection of pathway inhibitors that promote survival. These cell lines should prove useful for cell-based screens to identify new regulators of KRAS- or BRAF-dependent ERK1/2 signalling (drug target discovery) as well as screening or triaging ‘hits’ from drug discovery screens.

中文翻译:

用于筛选 KRAS-RAF-MEK1/2-ERK1/2 通路抑制剂或调节剂的报告细胞系

由于 RAS 蛋白(尤其是 KRAS)、BRAF、CRAF、MEK1 和 MEK2 的突变,RAS 调节的 RAF-MEK1/2-ERK1/2 信号通路在癌症中被激活。虽然 KRASG12C(肺腺癌)和 BRAF 和 MEK1/2(黑色素瘤和结直肠癌)抑制剂已获得临床批准,但获得性耐药仍然是一个问题。因此,对该途径的新抑制剂(尤其是 RAS 蛋白)、新抑制剂模式和调节剂(可能是新药物靶标)的探索仍在继续,并且越来越多地涉及基于细胞的小分子筛选或遗传筛选,例如 RNAi、CRISPR 或蛋白质干扰。在这里,我们描述了表现出多西环素依赖性表达 KRASG12V 或 BRAFV600E 的细胞系,并具有稳定整合的 EGR1:EmGFP 报告基因,可以通过流式细胞术、高内涵显微镜或免疫印迹检测到。KRASG12V 或 BRAFV600E 驱动的 EmGFP 表达被 MEK1/2 或 ERK1/2 抑制剂(MEKi 和 ERKi)抑制。BRAFi 抑制 BRAFV600E 驱动的 EmGFP 表达,但增强对 KRASG12V 的反应,概括了野生型 RAF 蛋白的矛盾激活。除了小分子外,编码 RAS 特异性抗体片段的 iDab6 的表达抑制 KRASG12V 驱动的 EmGFP 表达,但不抑制 BRAFV600E 驱动的 EmGFP 表达。最后,用 EmGFP 替代细菌硝基还原酶基因,使得 KRASG12V 或 BRAFV600E 在前药存在的情况下驱动细胞死亡,这可能允许选择促进存活的途径抑制剂。这些细胞系应该可用于基于细胞的筛选,以识别 KRAS 或 BRAF 依赖性 ERK1/2 信号传导(药物靶标发现)的新调节因子,以及筛选或分类药物发现筛选中的“命中”。
更新日期:2024-03-07
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