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Construction of a prognostic model with CAFs for predicting the prognosis and immunotherapeutic response of lung squamous cell carcinoma
Journal of Cellular and Molecular Medicine ( IF 5.3 ) Pub Date : 2024-03-23 , DOI: 10.1111/jcmm.18262
Xiang Zhang 1 , Qingqing Xiao 2 , Cong Zhang 3 , Qinghua Zhou 1 , Tao Xu 4
Affiliation  

Lung squamous cell carcinoma (LUSC) is one of the subtypes of lung cancer (LC) that contributes to approximately 25%–30% of its prevalence. Cancer‐associated fibroblasts (CAFs) are key cellular components of the TME, and the large number of CAFs in tumour tissues creates a favourable environment for tumour development. However, the function of CAFs in the LUSC is complex and uncertain. First, we processed the scRNA‐seq data and classified distinct types of CAFs. We also identified prognostic CAFRGs using univariate Cox analysis and conducted survival analysis. Additionally, we assessed immune cell infiltration in CAF clusters using ssGSEA. We developed a model with a significant prognostic correlation and verified the prognostic model. Furthermore, we explored the immune landscape of LUSC and further investigated the correlation between malignant features and LUSC. We identified CAFs and classified them into three categories: iCAFs, mCAFs and apCAFs. The survival analysis showed a significant correlation between apCAFs and iCAFs and LUSC patient prognosis. Kaplan–Meier analysis showed that patients in CAF cluster C showed a better survival probability compared to clusters A and B. In addition, we identified nine significant prognostic CAFRGs (CLDN1, TMX4, ALPL, PTX3, BHLHE40, TNFRSF12A, VKORC1, CST3 and ADD3) and subsequently employed multivariate Cox analysis to develop a signature and validate the model. Lastly, the correlation between CAFRG and malignant features indicates the potential role of CAFRG in promoting tumour angiogenesis, EMT and cell cycle alterations. We constructed a CAF prognostic signature for identifying potential prognostic CAFRGs and predicting the prognosis and immunotherapeutic response for LUSC. Our study may provide a more accurate prognostic assessment and immunotherapy targeting strategies for LUSC.

中文翻译:

利用 CAF 构建预测肺鳞癌预后和免疫治疗反应的预后模型

肺鳞状细胞癌 (LUSC) 是肺癌 (LC) 的亚型之一,约占其患病率的 25%–30%。癌症相关成纤维细胞(CAF)是TME的关键细胞成分,肿瘤组织中大量的CAF为肿瘤的发展创造了有利的环境。然而,CAF 在 LUSC 中的功能是复杂且不确定的。首先,我们处理了 scRNA-seq 数据并对不同类型的 CAF 进行了分类。我们还使用单变量 Cox 分析确定了预后 CAFRG,并进行了生存分析。此外,我们使用 ssGSEA 评估了 CAF 簇中的免疫细胞浸润。我们开发了一个具有显着预后相关性的模型并验证了该预后模型。此外,我们探索了 LUSC 的免疫景观,并进一步研究了恶性特征与 LUSC 之间的相关性。我们识别了 CAF 并将其分为三类:iCAF、mCAF 和 apCAF。生存分析显示 apCAF 和 iCAF 与 LUSC 患者预后之间存在显着相关性。 Kaplan-Meier 分析显示,与 A 组和 B 组相比,CAF 组 C 中的患者表现出更好的生存概率。此外,我们还确定了 9 个具有显着预后意义的 CAFRG(CLDN1、TMX4、ALPL、PTX3、BHLHE40、TNFRSF12A、VKORC1、CST3 和 ADD3) ),随后采用多元 Cox 分析来开发签名并验证模型。最后,CAFRG 与恶性特征之间的相关性表明 CAFRG 在促进肿瘤血管生成、EMT 和细胞周期改变中的潜在作用。我们构建了 CAF 预后特征,用于识别潜在的预后 CAFRG 并预测 LUSC 的预后和免疫治疗反应。我们的研究可能为 LUSC 提供更准确的预后评估和免疫治疗靶向策略。
更新日期:2024-03-23
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