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Bacillus subtilis remains translationally active after CRISPRi-mediated replication initiation arrest mSystems (IF 6.4) Pub Date : 2024-03-28 Vanessa Muñoz-Gutierrez, Fabián A. Cornejo, Katja Schmidt, Christian K. Frese, Manuel Halte, Marc Erhardt, Alexander K. W. Elsholz, Kürşad Turgay, Emmanuelle Charpentier
Although bacteria constantly replicate under laboratory conditions, natural environments expose them to various stresses such as lack of nutrients, high salinity, and pH changes, which can trigger non-replicating states. These states can enable bacteria ...
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The functional small RNA interactome reveals targets for the vancomycin-responsive sRNA RsaOI in vancomycin-tolerant Staphylococcus aureus mSystems (IF 6.4) Pub Date : 2024-03-27 Winton Wu, Chi Nam Ignatius Pang, Daniel G. Mediati, Jai Justin Tree
The emergence of multidrug-resistant Staphylococcus aureus (MRSA) is a major public health concern. Current treatment is dependent on the efficacy of last-line antibiotics like vancomycin. The most common cause of vancomycin treatment failure is strains ...
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High-throughput profiling of metabolic responses to exogenous nutrients in Synechocystis sp. PCC 6803 mSystems (IF 6.4) Pub Date : 2024-03-27 Vilhelmiina Haavisto, Zachary Landry, Sammy Pontrelli
Cyanobacteria capture and release carbon compounds to fuel microbial food webs, yet we lack a comprehensive understanding of how external nutrients modify their behavior and what they produce. We developed a high throughput culturing platform to evaluate ...
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Laser desorption rapid evaporative ionization mass spectrometry (LD-REIMS) demonstrates a direct impact of hypochlorous acid stress on PQS-mediated quorum sensing in Pseudomonas aeruginosa mSystems (IF 6.4) Pub Date : 2024-03-26 Rob BradleyDaniel SimonLivia SpigaYuchen XiangZoltan TakatsHuw Williams1Department of Life Sciences, Faculty of Natural Sciences, Imperial College London, London, United Kingdom2Department of Metabolism, Digestion and Reproduction, Faculty of Medicine, Imperial College London, London, United Kingdom3The Rosalind Franklin Institute, Didcot, United Kingdom, Neha Garg
mSystems, Ahead of Print.
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DnaK duplication and specialization in bacteria correlates with increased proteome complexity mSystems (IF 6.4) Pub Date : 2024-03-26 Zhuo PanLi ZhuoTian-yu WanRui-yun ChenYue-zhong Li1State Key Laboratory of Microbial Technology, Institute of Microbial Technology, Shandong University, Qingdao, China2Suzhou Research Institute, Shandong University, Suzhou, China, Sarah L. Svensson
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Microbiota from human infants consuming secretors or non-secretors mothers’ milk impacts the gut and immune system in mice mSystems (IF 6.4) Pub Date : 2024-03-26 Manoj GurungBrent Thomas SchlegelDhivyaa RajasundaramRenee FoxLars BodeTianming YaoStephen R. LindemannTanya LeRoithQuentin D. ReadChristy SimeckaLaura CarrollAline AndresLaxmi Yeruva1Microbiome and Metabolism Research Unit (MMRU), USDA-ARS, SEA, Arkansas Children’s Nutrition Center, Little Rock, Arkansas, USA2University of Pittsburgh Medical Center (UPMC), Children’s Hospital of Pittsburgh, Pittsburgh
mSystems, Ahead of Print.
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Uncovering the boundaries of Campylobacter species through large-scale phylogenetic and nucleotide identity analyses mSystems (IF 6.4) Pub Date : 2024-03-26 Ruochen Wu, Michael Payne, Li Zhang, Ruiting Lan
In recent years, Campylobacter has gained recognition as the leading cause of bacterial gastroenteritis worldwide, leading to a substantial rise in the collection of genomic data of the Campylobacter genus in public databases. Currently, a standardized ...
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Design of a proteolytic module for improved metabolic modeling of Bacteroides caccae mSystems (IF 6.4) Pub Date : 2024-03-22 Amandine PaulayGhjuvan M. GrimaudRaphaël CaballeroBéatrice LarocheMarion LeclercSimon LabartheEmmanuelle Maguin1Université Paris-Saclay, INRAE, AgroParisTech, UMR1319 Micalis Institute, Jouy-en-Josas, France2Biomathematica, Ajaccio, France3Université Paris-Saclay, INRAE, MaIAGE, Jouy-en-Josas, France4Université Paris-Saclay, Inria, Centre Inria de Saclay, Palaiseau, France5Pendulum Therapeutics, San
mSystems, Ahead of Print.
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Dual RNA sequencing of Helicobacter pylori and host cell transcriptomes reveals ontologically distinct host-pathogen interaction mSystems (IF 6.4) Pub Date : 2024-03-22 Wei HuZhi Yong ZhaiZhao Yu HuangZe Min ChenPing ZhouXia Xi LiGen Hua YangChong Ju BaoLi Juan YouXiao Bing CuiGui Li XiaMei Ping Ou YangLin ZhangWilliam Ka Kei WuLong Fei LiYu Xuan ZhangZhan Gang XiaoWei Gong1Department of Gastroenterology, Shenzhen Hospital, Southern Medical University, Shenzhen, Guangdong, China2The Third School of Clinical Medicine, Southern Medical University, Shenzhen, Guangdong
mSystems, Ahead of Print.
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What role do biocontrol agents with Mg2+ play in the fate of antibiotic resistome and pathogenic bacteria in the phyllosphere? mSystems (IF 6.4) Pub Date : 2024-03-20 Qiqi ZhiGe TanShaolong WuQianqian MaJianqiang FanYiqiang ChenJingjing LiZhengrong HuYansong XiaoLiangzhi LiZhenghua LiuZhaoyue YangZhendong YangDelong MengHuaqun YinQianjun TangTianbo Liu1School of Minerals Processing and Bioengineering, Central South University, Changsha, China2Key Laboratory of Biometallurgy, Ministry of Education, Changsha, China3China Tobacco Hunan Industrial Co., Ltd., Changsha
mSystems, Ahead of Print.
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Outbreak of NDM-5-producing Klebsiella pneumoniae ST307: an emerging high-risk antimicrobial resistance clone in Shanghai, China mSystems (IF 6.4) Pub Date : 2024-03-20 Junying Zhu, Guangyu Wang, Min Li
The high-risk clone ST307, associated with various carbapenemases, including KPC, NDM, and OXA, has a global distribution. However, it is rarely reported in China, let alone causing outbreaks. Here, we found an outbreak caused by the clonal transmission ...
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Alterations in the gut microbiota and its metabolites contribute to metabolic maladaptation in dairy cows during the development of hyperketonemia mSystems (IF 6.4) Pub Date : 2024-03-19 Zhengzhong Luo, Zhenlong Du, Yixin Huang, Tao Zhou, Dan Wu, Xueping Yao, Liuhong Shen, Shumin Yu, Kang Yong, Baoning Wang, Suizhong Cao
Accumulating evidence is pointing to an important association between gut microbiota-derived metabolites and metabolic disorders in humans and animals; however, this association in dairy cows from late gestation to early lactation is poorly understood. To ...
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Microbial species pool-mediated diazotrophic community assembly in crop microbiomes during plant development mSystems (IF 6.4) Pub Date : 2024-03-19 Chao XiongBrajesh K. SinghYong-Guan ZhuHang-Wei HuPei-Pei LiYan-Lai HanLi-Li HanQin-Bing ZhangJun-Tao WangSi-Yi LiuChuan-Fa WuAn-Hui GeLi-Mei ZhangJi-Zheng He1State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China2University of Chinese Academy of Sciences, Beijing, China3Hawkesbury Institute for the Environment
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The European livestock resistome mSystems (IF 6.4) Pub Date : 2024-03-19 Patrick MunkDongsheng YangTimo RöderLeonie MaierThomas Nordahl PetersenAna Sofia Ribeiro DuartePhilip T. L. C. ClausenChristian BrinchLiese Van GompelRoosmarijn LuikenJaap A. WagenaarHeike SchmittDick J. J. HeederikDik J. MeviusLidwien A. M. SmitAlex BosserFrank M. Aarestrup1National Food Institute, Technical University of Denmark, Lyngby, Denmark2Institute for Risk Assessment Sciences, Faculty of
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A quorum-sensing regulatory cascade for siderophore-mediated iron homeostasis in Chromobacterium violaceum mSystems (IF 6.4) Pub Date : 2024-03-19 Bianca B. BatistaVinicius M. de LimaBeatriz A. PicinatoTie KoideJosé F. da Silva Neto1Departamento de Biologia Celular e Molecular e Bioagentes Patogênicos, Faculdade de Medicina de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto, São Paulo, Brazil2Departamento de Bioquímica e Imunologia, Faculdade de Medicina de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto, São Paulo, Brazil
mSystems, Ahead of Print.
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Diaphorobacter nitroreducens synergize with oxaliplatin to reduce tumor burden in mice with lung adenocarcinoma mSystems (IF 6.4) Pub Date : 2024-03-14 Yalan NiRui LiXiaoyu ShenDeli YiYilin RenFudong WangYan GengQingjun You1Department of Oncology, Affiliated Children’s Hospital of Jiangnan University, Wuxi, Jiangsu, China2Key Laboratory of Carbohydrate Chemistry and Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi, Jiangsu, China3Affiliated Hospital of Jiangnan University, Wuxi, China4School of Life Science
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Diversity and distribution of biosynthetic gene clusters in agricultural soil microbiomes mSystems (IF 6.4) Pub Date : 2024-03-12 Zhiguo ZhangLu ZhangLihan ZhangHaiyan ChuJizhong ZhouFeng Ju1College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, Zhejiang, China2Key Laboratory of Coastal Environment and Resources Research of Zhejiang Province, School of Engineering, Westlake University, Hangzhou, Zhejiang, China3Center of Synthetic Biology and Integrated Bioengineering, Westlake University, Hangzhou, Zhejiang
mSystems, Ahead of Print.
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Combined transcriptomic and ChIPseq analyses of the Bordetella pertussis RisA regulon mSystems (IF 6.4) Pub Date : 2024-03-12 Loïc CoutteRudy AntoineStephanie SlupekCamille Locht1U1019–UMR9017, University of Lille, CNRS, Inserm, CHU Lille, CIIL-Center for Infection and Immunity of Lille, Institut Pasteur de Lille, Lille, France, Mark J. Mandel
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Decoding the chemical language of Suillus fungi: genome mining and untargeted metabolomics uncover terpene chemical diversity mSystems (IF 6.4) Pub Date : 2024-03-12 Sameer MudbhariLotus LofgrenManasa R. AppidiRytas VilgalysRobert L. HettichPaul E. Abraham1UT-ORNL Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, Tennessee, USA2Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA3Biology Department, Duke University, Durham, North Carolina, USA, Yu-Liang Yang, Kristina HaslingerEmile Gluck-Thaler
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Bioactive exometabolites drive maintenance competition in simple bacterial communities mSystems (IF 6.4) Pub Date : 2024-03-12 John L. ChodkowskiAshley Shade1Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, Michigan, USA2Universite Claude Bernard Lyon 1, Laboratoire d'Ecologie Microbienne, UMR CNRS 5557, UMR INRAE 1418, VetAgro Sup, Villeurbanne, France, Kiran Patil
mSystems, Ahead of Print.
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Multifactorial genetic control and magnesium levels govern the production of a Streptomyces antibiotic with unusual cell density dependence mSystems (IF 6.4) Pub Date : 2024-03-11 Hindra Marie A. Elliot1Institute of Infectious Disease Research and Department of Biology, McMaster University, Hamilton, Ontario, Canada, Ákos T. Kovács
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Formation of a constructed microbial community in a nutrient-rich environment indicates bacterial interspecific competition mSystems (IF 6.4) Pub Date : 2024-03-12 Jia WangManasa R. AppidiLeah H. BurdickPaul E. AbrahamRobert L. HettichDale A. PelletierMitchel J. Doktycz1Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA2UT-ORNL Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, Tennessee, USA, Stephen R. Lindemann
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Comprehensive virulence profiling and evolutionary analysis of specificity determinants in Staphylococcus aureus two-component systems mSystems (IF 6.4) Pub Date : 2024-03-12 Stephen Dela AhatorKaroline WenzlKristin HegstadChristian S. LentzMona Johannessen1Research Group for Host-Microbe Interactions, Centre for New Antibacterial Strategies (CANS), Department of Medical Biology, Faculty of Health Sciences, UiT- The Arctic University of Norway, Tromsø, Norway2Norwegian National Advisory Unit on Detection of Antimicrobial Resistance, Department of Microbiology and Infection
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A method to correct for local alterations in DNA copy number that bias functional genomics assays applied to antibiotic-treated bacteria mSystems (IF 6.4) Pub Date : 2024-03-12 Geraldine J. SullivanLars BarquistAmy K. Cain1ARC Centre of Excellence in Synthetic Biology, School of Natural Sciences, Macquarie University, Sydney, Australia2Faculty of Medicine, University of Würzburg, Würzburg, Germany3Helmholtz Institute for RNA-based Infection Research (HIRI), Helmholtz Center for Infection Research (HZI), Würzburg, Germany4Department of Biology, University of Toronto Mississauga
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Inhibition of inosine metabolism of the gut microbiota decreases testosterone secretion in the testis mSystems (IF 6.4) Pub Date : 2024-03-12 Lei TangXizhong YangMengting ZhouLingxin FengCuijie JiJie LiangBei ZhangRuowu ShenLuoyang Wang1Department of Special Medicine, School of Basic Medicine, Qingdao University, Qingdao, China2Department of Spine Surgery, Qingdao Haici Medical Group, Qingdao, China3Department of Immunology, School of Basic Medicine, Qingdao University, Qingdao, China4Department of Oncology, The Affiliated Hospital of Qingdao
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The host transcriptional response to superinfection by influenza A virus and Streptococcus pneumoniae mSystems (IF 6.4) Pub Date : 2024-03-06 Ofir CohnGal YankovitzMichal MandelboimNaama Peshes-YalozRachel BrandesEran BacharachIrit Gat-Viks1The Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel2Central Virology Laboratory, Ministry of Health, Chaim Sheba Medical Center, Ramat Gan, Israel3Department of Epidemiology and Preventive Medicine, Sackler Faculty of Medicine
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Linking ecosystem multifunctionality to microbial community features in rivers along a latitudinal gradient mSystems (IF 6.4) Pub Date : 2024-03-06 Miaomiao CaiCaifang ZhangCaroline Njambi NdunguGuihua LiuWenzhi LiuQuanfa Zhang1CAS Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China2Danjiangkou Wetland Ecosystem Field Scientific Observation and Research Station, Chinese Academy of Sciences & Hubei Province, Wuhan, China3College of Life Sciences, University of Chinese Academy
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Seasonal and geographical impact on the Irish raw milk microbiota correlates with chemical composition and climatic variables mSystems (IF 6.4) Pub Date : 2024-03-06 Min YapOrla O'SullivanPaul W. O'TooleJeremiah J. SheehanMark A. FenelonPaul D. Cotter1Teagasc Food Research Centre, Cork, Ireland2School of Microbiology, University College Cork, Cork, Ireland3APC Microbiome Ireland, Cork, Ireland4VistaMilk SFI Research Centre, Cork, Ireland5Dairy Processing Technology Centre (DPTC), Limerick, Ireland, Jessica L. Metcalf
mSystems, Ahead of Print.
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MbovP0725, a secreted serine/threonine phosphatase, inhibits the host inflammatory response and affects metabolism in Mycoplasma bovis mSystems (IF 6.4) Pub Date : 2024-03-05 Hui ZhangYiqiu ZhangDoukun LuXi ChenYingyu ChenChangmin HuAizhen Guo1College of Animal & Veterinary Sciences, Key Laboratory of Animal Medicine of Sichuan Province, Southwest Minzu University, Chengdu, China2The State Key Laboratory of Agricultural Microbiology, College of Veterinary Medicine, Hubei Hongshan Laboratory, Huazhong Agricultural University, Wuhan, China3Key Laboratory of Development of
mSystems, Ahead of Print.
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Taxonomic difference in marine bloom-forming phytoplanktonic species affects the dynamics of both bloom-responding prokaryotes and prokaryotic viruses mSystems (IF 6.4) Pub Date : 2024-03-05 Hiroaki TakebeKento TominagaTatsuhiro IsozakiTetsuhiro WatanabeKeigo YamamotoRyoma KamikawaTakashi Yoshida1Graduate School of Agriculture, Kyoto University, Kyoto, Japan2Graduate School of Frontier Sciences, The University of Tokyo, Tokyo, Japan3Research Institute of Environment, Agriculture and Fisheries, Osaka Prefecture, Osaka, Japan, Hans C. Bernstein
mSystems, Ahead of Print.
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Taxonomic and metabolic development of the human gut microbiome across life stages: a worldwide metagenomic investigation mSystems (IF 6.4) Pub Date : 2024-03-05 Leonardo MancabelliChristian MilaniRosita De BiaseFabiana BocchioFederico FontanaGabriele Andrea LugliGiulia AlessandriChiara TarracchiniAlice ViappianiFlora De ContoAntonio NouvenneAndrea TicinesiOvidio BussolatiTiziana MeschiRossana CecchiFrancesca TurroniMarco Ventura1Department of Medicine and Surgery, University of Parma, Parma, Italy2Interdepartmental Research Centre "Microbiome Research Hub"
mSystems, Ahead of Print.
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In-depth characterization of a selection of gut commensal bacteria reveals their functional capacities to metabolize dietary carbohydrates with prebiotic potential mSystems (IF 6.4) Pub Date : 2024-03-05 Cassandre Bedu-FerrariPaul BiscarratFrederic PepkeSarah VatiCyril ChaudemancheFlorence CastelliCéline CholletOlivier RuéChristelle Hennequet-AntierPhilippe LangellaClaire Cherbuy1Micalis Institute, Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), AgroParisTech, Université Paris-Saclay, Jouy-en-Josas, France2General Mills France, Boulogne Billancourt, France3Service
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Discovery and characterization of novel DNA viruses in Apis mellifera: expanding the honey bee virome through metagenomic analysis mSystems (IF 6.4) Pub Date : 2024-03-05 Dominika KadlečkováMartina SalákováTomáš ErbanRuth Tachezy1Department of Genetics and Microbiology, Faculty of Science BIOCEV, Charles University, Vestec, Průmyslová, Czechia2Crop Research Institute, Drnovská, Prague, Czechia, Morgan G. I. Langille
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Distinct compositions and functions of circulating microbial DNA in the peripheral blood compared to fecal microbial DNA in healthy individuals mSystems (IF 6.4) Pub Date : 2024-03-01 Taiyu ZhaiWenbo RenXufeng JiYifei WangHaizhen ChenYuting JinQiao LiangNan ZhangJing Huang1Department of Clinical Laboratory, The First Hospital of Jilin University, Changchun, China2College of Medical Technology, Beihua University, Jilin, China, James R. Brown
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Bisphenol A exposure affects specific gut taxa and drives microbiota dynamics in childhood obesity mSystems (IF 6.4) Pub Date : 2024-03-01 Ana Lopez-MorenoKlara CerkLourdes RodrigoAntonio SuarezMargarita AguileraAlicia Ruiz-Rodriguez1Department of Microbiology, Faculty of Pharmacy, University of Granada, Campus of Cartuja, Granada, Spain2Institute of Nutrition and Food Technology "José Mataix" (INYTA), Centre of Biomedical Research, University of Granada, Granada, Spain3Instituto de Investigación Biosanitaria ibs, Granada, Spain4Quadram
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Seasonality and longer-term development generate temporal dynamics in the Populus microbiome mSystems (IF 6.4) Pub Date : 2024-02-29 William A. ArgiroffAlyssa A. CarrellDawn M. KlingemanNicholas C. DoveWellington MucheroAllison M. VeachToni WahlSteven J. LebreuxAmber B. WebbKellie PeytonChristopher W. SchadtMelissa A. Cregger1Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA2Department of Integrative Biology, The University of Texas, San Antonio, Texas, USA3Department of Microbiology, University of Tennessee
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New aspects characterizing non-obese NAFLD by the analysis of the intestinal flora and metabolites using a mouse model mSystems (IF 6.4) Pub Date : 2024-02-29 Wenji ZhangWenli ChengJingHui LiZhenrui HuangHui LinWenjuan Zhang1Guangdong Provincial Engineering and Technology Research Center for Tobacco Breeding and Comprehensive Utilization, Key Laboratory of Crop Genetic Improvement of Guangdong Province, Crops Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China2Department of Public Health and Preventive Medicine, School of Medicine
mSystems, Ahead of Print.
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Refinement of the “Candidatus Accumulibacter” genus based on metagenomic analysis of biological nutrient removal (BNR) pilot-scale plants operated with reduced aeration mSystems (IF 6.4) Pub Date : 2024-02-28 Rachel D. StewartKevin S. MyersCarly AmstadtMatt SeibKatherine D. McMahonDaniel R. Noguera1Department of Civil and Environmental Engineering, University of Wisconsin-Madison, Madison, Wisconsin, USA2Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, Wisconsin, USA3Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, Madison, Wisconsin, USA4Madison Metropolitan
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Erratum for Kujawinski et al., “Metabolite diversity among representatives of divergent Prochlorococcus ecotypes” mSystems (IF 6.4) Pub Date : 2024-02-27 Elizabeth B. KujawinskiRogier BraakmanKrista LongneckerJamie W. BeckerSallie W. ChisholmKeven DooleyMelissa C. Kido SouleGretchen J. SwarrKathryn Halloran
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Molecular physiology of Antarctic diatom natural assemblages and bloom event reveal insights into strategies contributing to their ecological success mSystems (IF 6.4) Pub Date : 2024-02-27 Carly M. MorenoMargaret BernishMeredith G. MeyerZuchuan LiNicole WaiteNatalie R. CohenOscar SchofieldAdrian Marchetti1Department of Earth, Marine and Environmental Sciences, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA2Division of Natural and Applied Science, Duke Kunshan University, Suzhou, Jiangsu, China3Department of Marine and Coastal Sciences, Rutgers University
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Effects of operational parameters on bacterial communities in Hong Kong and global wastewater treatment plants mSystems (IF 6.4) Pub Date : 2024-02-27 Yulin ZhangYu DengChunxiao WangShuxian LiFrankie T. K. LauJizhong ZhouTong Zhang1Environmental Microbiome Engineering and Biotechnology Lab, Department of Civil Engineering, The University of Hong Kong, Hong Kong, China2Drainage Services Department, The Government of the Hong Kong Special Administrative Region of the People’s Republic of China, Wanchai, Hong Kong, China3Institute for Environmental
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Metagenomic assembled genomes indicated the potential application of hypersaline microbiome for plant growth promotion and stress alleviation in salinized soils mSystems (IF 6.4) Pub Date : 2024-02-20 Kiran DindhoriaRaghawendra KumarBhavya BhargavaRakshak Kumar1Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh, India2Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, India, Rup Lal, Shashi Kant BhatiaMukesh Kumar Awasthi
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A novel Bartonella-like bacterium forms an interdependent mutualistic symbiosis with its host, the stored-product mite Tyrophagus putrescentiae mSystems (IF 6.4) Pub Date : 2024-02-21 Qing XiongBruno SopkoPavel B. KlimovJan Hubert1School of Biomedical Sciences, The Chinese University of Hong Kong, Hong Kong, China2Department of Health Technology and Informatics, The Hong Kong Polytechnic University, Hong Kong, China3Crop Research Institute, Prague, Czechia4Purdue University, Lilly Hall of Life Sciences, West Lafayette, Indiana, USA5Department of Microbiology, Nutrition and Dietetics
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Increasing transposase abundance with ocean depth correlates with a particle-associated lifestyle mSystems (IF 6.4) Pub Date : 2024-02-21 Juntao ZhongTroy OsbornThais Del Rosario HernándezOleksandr KyrysyukBenjamin J. TullyRika E. Anderson1Carleton College, Northfield, Minnesota, USA2Department of Medicine, Washington University in St. Louis, St. Louis, Missouri, USA3Department of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, Rhode Island, USA4Yale School of Medicine, Yale University, New Haven, Connecticut
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Massively parallel mutant selection identifies genetic determinants of Pseudomonas aeruginosa colonization of Drosophila melanogaster mSystems (IF 6.4) Pub Date : 2024-02-21 Jessica MilesGabriel L. LozanoJeyaprakash RajendhranEric V. StabbJo HandelsmanNichole A. Broderick1Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, Connecticut, USA2Graduate Program in Microbiology, Yale University, New Haven, Connecticut, USA3Department of Biological Sciences, University of Illinois Chicago, Chicago, Illinois, USA4Department of Biology, Johns
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A photoheterotrophic bacterium from Iceland has adapted its photosynthetic machinery to the long days of polar summer mSystems (IF 6.4) Pub Date : 2024-02-20 Jürgen TomaschKarel KopejtkaTomáš BílýAlastair T. GardinerZdenko GardianSahana ShivaramuMichal KoblížekDavid Kaftan1Laboratory of Anoxygenic Phototrophs, Institute of Microbiology of the Czech Academy of Sciences, Třeboň, Czechia2Institute of Parasitology, Biology Centre, Czech Academy of Sciences, České Budějovice, Czechia3Department Chemistry, Faculty of Science, University of South Bohemia, České
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Nanopore adaptive sampling effectively enriches bacterial plasmids mSystems (IF 6.4) Pub Date : 2024-02-20 Jens-Uwe UlrichLennard EppingTanja PilzBirgit WaltherKerstin StinglTorsten SemmlerBernhard Y. Renard1Hasso Plattner Institute, Digital Engineering Faculty, University of Potsdam, Potsdam, Germany2Department of Mathematics and Computer Science, Free University of Berlin, Berlin, Germany3Phylogenomics Unit, Center for Artificial Intelligence in Public Health Research, Robert Koch Institute, Wildau, Germany4Genome
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Extreme environments simplify reassembly of communities of arbuscular mycorrhizal fungi mSystems (IF 6.4) Pub Date : 2024-02-20 Nataša ŠibancDave R. ClarkThorunn HelgasonAlex J. DumbrellIrena Maček1Department of Agronomy, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia2Department of forest physiology and genetics, Slovenian Forestry Institute, Ljubljana, Slovenia3School of Life Sciences, University of Essex, Colchester, United Kingdom4Institute for Analytics and Data Science, University of Essex, Colchester
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Multidrug resistance plasmids commonly reprogram the expression of metabolic genes in Escherichia coli mSystems (IF 6.4) Pub Date : 2024-02-20 Rebecca J. HallAnn E. SnaithMatthew J. N. ThomasMichael A. BrockhurstAlan McNally1Institute of Microbiology and Infection, College of Medical and Dental Sciences, University of Birmingham, Birmingham, United Kingdom2Division of Evolution and Genomic Sciences, University of Manchester, Manchester, United Kingdom, Alejandra Rodríguez-Verdugo
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A CRISPR interference system for engineering biological nitrogen fixation mSystems (IF 6.4) Pub Date : 2024-02-20 Steven J. RussellAmanda K. GarciaBetül Kaçar1Department of Bacteriology, University of Wisconsin-Madison, Madison, Wisconsin, USA, Jack A. Gilbert
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Benchmarking informatics approaches for virus discovery: caution is needed when combining in silico identification methods mSystems (IF 6.4) Pub Date : 2024-02-20 Bridget HegartyJames Riddell VEric BastienKathryn LangenfeldMorgan LindbackJaspreet S. SainiAnthony WingJessica ZhangMelissa Duhaime1Department of Civil and Environmental Engineering, Case Western Reserve University, Cleveland, Ohio, USA2Department of Microbiology, The Ohio State University, Columbus, Ohio, USA3Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, Michigan
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Temporal dynamics of gut microbiomes in non-industrialized urban Amazonia mSystems (IF 6.4) Pub Date : 2024-02-20 Ana Paula SchaanAmanda VidalAn-Ni ZhangMathilde PoyetEric J. AlmMathieu GroussinÂndrea Ribeiro-dos-Santos1Genetics and Molecular Biology Program, Universidade Federal do Pará, Belém, Pará, Brazil2Institute of Clinical Molecular Biology, Christian-Albrecht University of Kiel, Kiel, Germany3Schleswig-Holstein University Clinic, Kiel, Germany4Instituto Tecnológico Vale, Belém, Pará, Brazil5Department
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Bacteriophage specificity is impacted by interactions between bacteria mSystems (IF 6.4) Pub Date : 2024-02-20 Ave T. BisesiWolfram MöbiusCarey D. NadellEleanore G. HansenSteven D. BowdenWilliam R. Harcombe1Department of Ecology, Evolution and Behavior, University of Minnesota, St. Paul, Minnesota, USA2Living Systems Institute, University of Exeter, Exeter, United Kingdom3Department of Physics and Astronomy, University of Exeter, Exeter, United Kingdom4Department of Biological Sciences, Dartmouth College, Hanover
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Annotating microbial functions with ProkFunFind mSystems (IF 6.4) Pub Date : 2024-02-16 Keith Dufault-ThompsonXiaofang Jiang1National Library of Medicine, National Institutes of Health, Bethesda, Maryland, USA, Samuel Chaffron
mSystems, Ahead of Print.
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Interpretation of vaginal metagenomic characteristics in different types of vaginitis mSystems (IF 6.4) Pub Date : 2024-02-16 Jiarong SongXue DongYue LanYunwei LuXu LiuXuena KangZhonglu HuangBisong YueYu LiuWenjin MaLibo ZhangHaijun YanMiao HeZhenxin FanTao Guo1Key Laboratory of Bioresources and Ecoenvironment (Ministry of Education), College of Life Sciences, Sichuan University, Chengdu, China2Department of Gynecology and Obstetrics, West China Second Hospital, Sichuan University, Chengdu, China3Meishan Women and Children’s
mSystems, Ahead of Print.
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Intestinal lysozyme1 deficiency alters microbiota composition and impacts host metabolism through the emergence of NAD+-secreting ASTB Qing110 bacteria mSystems (IF 6.4) Pub Date : 2024-02-16 Chengye ZhangChen XiangKaichen ZhouXingchen LiuGuofeng QiaoYabo ZhaoKemeng DongKe SunZhihua Liu1Institute for Immunology, School of Medicine, Tsinghua University, Beijing, China2Beijing Institute of Genomics, Chinese Academy of Sciences, China National Center for Bioinformation, Beijing, China3University of Chinese Academy of Sciences, Beijing, China4Tsinghua-Peking Center for Life Sciences, Tsinghua
mSystems, Ahead of Print.
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Genomics of the expanding pine pathogen Lecanosticta acicola reveals patterns of ongoing genetic admixture mSystems (IF 6.4) Pub Date : 2024-02-16 Marina Marcet-HoubenFernando CruzJéssica Gómez-GarridoTyler S. AliotoJuan Carlos Nunez-RodriguezNebai MesanzaMarta GutEugenia IturritxaToni Gabaldon1Barcelona Supercomputing Centre (BSC-CNS), Barcelona, Spain2Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, Spain3Centro de Investigación Biomédica En Red de Enfermedades Infecciosas
mSystems, Ahead of Print.
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Genome-scale metabolic modeling of the human milk oligosaccharide utilization by Bifidobacterium longum subsp. infantis mSystems (IF 6.4) Pub Date : 2024-02-16 Loreto RománFelipe Melis-ArcosTomás PröschlePedro A. SaaDaniel Garrido1Department of Chemical and Bioprocess Engineering, School of Engineering, Pontificia Universidad Católica de Chile, Santiago, Chile2Institute for Mathematical and Computational Engineering, Pontificia Universidad Católica de Chile, Vicuña Mackenna, Santiago, Chile, Jack A. Gilbert
mSystems, Ahead of Print.
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Reconstructing the transcriptional regulatory network of probiotic L. reuteri is enabled by transcriptomics and machine learning mSystems (IF 6.4) Pub Date : 2024-02-13 Jonathan Josephs-SpauldingAkanksha RajputYing HefnerRichard SzubinArchana BalasubramanianGaoyuan LiDaniel C. ZielinskiLeonie JahnMorten SommerPatrick PhaneufBernhard O. Palsson1The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Copenhagen, Denmark2Department of Bioengineering, University of California, San Diego, California, USA, Danilo Ercolini
mSystems, Ahead of Print.
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Use of a combined antibacterial synergy approach and the ANNOgesic tool to identify novel targets within the gene networks of multidrug-resistant Klebsiella pneumoniae mSystems (IF 6.4) Pub Date : 2024-02-13 Hyunsook LeeSung-Huan YuJung Eun ShimDongeun Yong1Department of Laboratory Medicine and Research Institute of Bacterial Resistance, Yonsei University College of Medicine, Seoul, South Korea2Brain Korea 21 PLUS Project for Medical Science, Yonsei University College of Medicine, Seoul, South Korea3Institute of Precision Medicine, College of Medicine, National Sun Yat-sen University, Kaohsiung, Taiwan4School
mSystems, Ahead of Print.