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Two novel Fe(III)-reducing bacteria, Geothrix campi sp. nov. and Geothrix mesophila sp. nov., isolated from paddy soils Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-04-17 Shuang Han, Shang Yang, Rong Tang, Cheng-Jie Xie, Xing Liu, Guo-Hong Liu, Shun-Gui Zhou
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Terrihabitans rhizophilus sp. nov., isolated from the rhizosphere soil of plant in temperate semi-arid steppe Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-04-12 Runze Bao, Huiling Guo, Yungang Liang, Kai Tang, Fuying Feng, Jianyu Meng
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Roseihalotalea indica gen. nov., sp. nov., a halophilic Bacteroidetes from mesopelagic Southwest Indian Ocean with higher carbohydrate metabolic potential Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-04-12 Beihan Chen, Mingzhe Zhang, Dan Lin, Jianing Ye, Kai Tang
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Prokaryotic communities of the French Polynesian sponge Dactylospongia metachromia display a site-specific and stable diversity during an aquaculture trial Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-04-11 Mathilde Maslin, Benoît Paix, Niels van der Windt, Rohani Ambo-Rappe, Cécile Debitus, Nabila Gaertner-Mazouni, Raimana Ho, Nicole J. de Voogd
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Extracellular vesicles from the mycoparasitic fungus Trichoderma harzianum Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-04-02
Abstract Trichoderma harzianum is a filamentous fungus that can act as a mycoparasite, saprophyte, or a plant symbiotic. It is widely used as a biological control agent against phytopathogenic fungi and can also be used for plant growth promotion and biofortification. Interaction between T. harzianum and phytopathogenic fungi involves mycoparasitism, competition, and antibiosis. Extracellular vesicles
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Comprehensive analysis of the CRISPR-Cas systems in Streptococcus thermophilus strains isolated from traditional yogurts Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-04-02
Abstract Phage resistance is crucial for lactic acid bacteria in the dairy industry. However, identifying all phages affecting these bacteria is challenging. CRISPR-Cas systems offer a resistance mechanism developed by bacteria and archaea against phages and plasmids. In this study, 11 S. thermophilus strains from traditional yogurts underwent analysis using next-generation sequencing (NGS) and bioinformatics
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Curtobacterium salicis sp. nov., isolated from willow tree stems in Washington state Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-03-29 John Freeman, Andrea Firrincieli, Douglas Baker, Sharon Doty
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Lyophilization for bacteria preservation: a promising approach for Yersinia pestis strains from an unique collection in Brazil (Fiocruz-CYP) Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-03-23 Igor Vasconcelos Rocha, Matheus Filgueira Bezerra, Marise Sobreira, Nilma Cintra Leal, Alzira Maria Paiva de Almeida
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Targeting methanotrophs and isolation of a novel psychrophilic Methylobacter species from a terrestrial Arctic alkaline methane seep in Lagoon Pingo, Central Spitsbergen (78° N) Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-03-22
Abstract The microbial diversity associated with terrestrial groundwater seepage through permafrost soils is tightly coupled to the geochemistry of these fluids. Terrestrial alkaline methane seeps from Lagoon Pingo, Central Spitsbergen (78°N) in Norway, with methane-saturated and oxygen-limited groundwater discharge providing a potential habitat for methanotrophy. Here, we report on the microbial community’s
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Phylogenomic analysis of the Ponticus clade: strains isolated from the spotted rose snapper (Lutjanus guttatus) Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-03-20 Alejandra de Jesús Chavarín-Meza, Bruno Gómez-Gil, Adrián González-Castillo
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The role of the Flb protein family in the life cycle of Aspergillus niger Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-03-19 Xiaoyi Chen, Juan P. Moran Torres, Han A. B. Wösten
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Maribacter halichondriae sp. nov., isolated from the marine sponge Halichondria panicea, displays features of a sponge-associated life style Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-03-15 Leon X. Steiner, Jutta Wiese, Tanja Rahn, Erik Borchert, Beate M. Slaby, Ute Hentschel
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Comparative genomics of an extensively drug resistant strain Klebsiella pneumoniae IITR008 with international high-risk clonal lineage ST147 isolated from river water Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-03-15 Deeksha Singh, Shilpee Pal, Srikrishna Subramanian, Natesan Manickam
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Antimicrobial peptides designed by computational analysis of proteomes Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-03-15 Dahiana Monsalve, Andrea Mesa, Laura M. Mira, Carlos Mera, Sergio Orduz, John W. Branch-Bedoya
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Expression of Staphylococcus aureus translation elongation factor P is regulated by a stress-inducible promotor Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-03-15
Abstract Translation elongation factor P, expressed by the efp gene, is a conserved protein closely related to bacterial virulence and environmental stress regulation responses, however, little is known about the efp gene expression regulations. Here, the strain of Staphylococcus aureus subsp. aureus NCTC 8325 was taken as the research object and cultured under different conditions, including different
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200 years of taxonomic confusion: Sporendonema and allies Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-03-14 Hazal Kandemir, Cony Decock, Margarita Hernández-Restrepo, Roman Labuda, Jos Houbraken, Macit Ilkit, G. Sybren de Hoog
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Description of Fuscovulum ytuae sp. nov, a facultative autotroph isolated from the intertidalite of Yangma island, China Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-03-13 Bin-zhe Zhang, Xiu-dan Xu, Dan-dan Zhou, Xue-Peng Li, Xu-dong Jiao, Jian Zhang
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Genome-based classification of genera Halosegnis and Salella, and description of four novel halophilic archaea isolated from a tidal flat Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-03-12 Yao Hu, Xue Ma, Shun Tan, Xin-Xin Li, Mu Cheng, Jing Hou, Heng-Lin Cui
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Veillonella faecalis sp. nov., a propionic acid-producing bacterium isolated from the faeces of an infant Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-03-12 Haneol Yang, Hana Jo, Seung Hyun Kim, Chan-Seok Yun, Seung-Hwan Park, Doo-Sang Park
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Oceanimonas pelagia sp. nov., a novel biosurfactant-producing and plastic-degrading potential bacterium isolated from marine coastal sediment Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-03-07 Hsiao-Tsu Yang, Yi-Hsuan Huang, Ying-Ning Ho
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Solibacillus ferritrahens sp. nov., a novel siderophore-producing bacterium isolated from Wumeng Mountain National Nature Reserve in Yunnan Province Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-03-01
Abstract A gram-stain-positive, aerobic, rod-shaped bacterial strain capable of producing siderophores, named YIM B08730T, was isolated from a soil sample collected from Wumeng Mountain National Nature Reserve, Zhaotong City, Yunnan Province. Growth occurred at 10–45 °C (optimum, 35–40 ℃), pH 7.0–9.0 (optimum, 7.0) and in the presence of 0–5 % (w/v) NaCl (optimum, 0–1 %, w/v). A comparative analysis
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Ciceribacter sichuanensis sp. nov., a plant growth promoting rhizobacterium isolated from root nodules of soybean in Sichuan, China Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-03-01 Yanqin Zhang, Yuanxue Chen, Petri Penttinen, Xing Wang, Ying Quan, Licheng Wen, Miao Yang, Xiaoping Zhang, Qiang Chen, Lingzi Zhang, Junjie Zhang, Xiaoxia Zhang, Kaiwei Xu
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Alcohol dehydrogenase system acts as the sole pathway for methanol oxidation in Desulfofundulus kuznetsovii strain TPOSR Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-03-01 Lukas Friedeheim, Sjef Boeren, Irene Sánchez-Andrea, Alfons J. M. Stams, Diana Z. Sousa
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Fluctibacter corallii gen. nov., sp. nov., isolated from the coral Montipora capitata on a reef in Kāneʻohe Bay, Oʻahu, Hawaiʻi, reclassification of Aestuariibacter halophilus as Fluctibacter halophilus comb. nov., and Paraglaciecola oceanifecundans as a later heterotypic synonym of Paraglaciecola agarilytica Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-03-01 Sarah A. Emsley, Rachel M. Loughran, Maximillian D. Shlafstein, Kaysa M. Pfannmuller, Yesmarie T. De La Flor, Charles G. Lein, Nicholas C. Dove, Marc J. Koyack, David K. Oline, Thomas E. Hanson, Patrick Videau, Jimmy H. Saw, Blake Ushijima
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Talaromyces sedimenticola sp. nov., isolated from the Mariana Trench Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-02-28 Hongbo Zhou, Liting Xu, Wenxian Liu, Kaiwen Ta, Xincun Wang, Jianwei Guo, Wenxi Luo, Zhiyuan Peng, Qiaoni Huang, Yuguang Wang
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The surface of leaves and fruits of Peruvian cacao is home for several Hannaella yeast species, including the new species Hannaella theobromatis sp. nov. Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-02-27
Abstract As part of a long-term study aiming to isolate and identify yeast species that inhabit the surface of leaves and fruits of native fine-aroma cacao in the department of Amazonas, Peru, we obtained multiple isolates of Hannaella species. Yeasts of the genus Hannaella are common inhabitants of the phyllosphere of natural and crop plants. On the basis of morphological, and physiological characteristics
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Functional characterization of a catalase gene PtCat associated with sclerotia formation in Pleurotus tuber-regium Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-02-27 Xuan Zhou, Li Sheng, Yingjuan Li, Aimin Ma
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Pseudomonas environmental strain produces a DegQ-derived and PDZ domain containing peptide with protease activity Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-02-24
Abstract In the search of new enzymatic activities with a possible industrial application, we focused on those microorganisms and their molecular mechanisms that allow them to succeed in the environment, particularly in the proteolytic activity and its central role in the microorganisms’ successful permanence. The use of highly active serine proteases for industrial applications is a modern need, especially
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Study of an Enterococcus faecium strain isolated from an artisanal Mexican cheese, whole-genome sequencing, comparative genomics, and bacteriocin expression Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-02-23 Daniel Acero-Pimentel, Diana I. Romero-Sánchez, Sac Nicté Fuentes-Curiel, Maricarmen Quirasco
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Function of Burkholderia pseudomallei RpoS and RpoN2 in bacterial invasion, intracellular survival, and multinucleated giant cell formation in mouse macrophage cell line Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-02-22 Duong Thi Hong Diep, Long Binh Vong, Sumalee Tungpradabkul
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Similarity of Chinese and Pakistani oral microbiome Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-02-19 Xiaofang Sun, Binghua Han, Qian Han, Qiaoling Yu, Sijie Wang, Jie Feng, Tianshu Feng, Xiaoshan Li, Shiheng Zhang, Huan Li
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Cell-free supernatants of probiotic consortia impede hyphal formation and disperse biofilms of vulvovaginal candidiasis causing Candida in an ex-vivo model Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-02-17 Sudaarsan Aruna Senthil Kumar, Dhesiga Krishnan, Sowndarya Jothipandiyan, Ramyadevi Durai, B. Narayanan Vedha Hari, Paramasivam Nithyanand
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Clostridium lamae sp. nov., a novel bacterium isolated from the fresh feces of alpaca Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-02-17 Xue Li, Ming Li, Weixiong Shi, Xia Li, Zhiguang Xiang, Lei Su
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Thiopseudomonas acetoxidans sp. nov., an aerobic acetic and butyric acids oxidizer isolated from anaerobic fermentation liquid of food waste Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-02-13
Abstract A Gram-stain-negative, oxidase-negative, rod-shaped, motile, facultatively anaerobic bacterial strain, designated as CY1220T, was isolated from an anaerobic fermentation liquid of food waste treatment plant. Phylogenetic analysis based on 16S rRNA gene sequences indicated that the strain CY1220T belongs to the genus Thiopseudomonas, with the highest sequence similarity to Thiopseudomonas alkaliphila
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Genomic and phylogenomic analysis of Fusobacteriaceae family and proposal to reclassify Fusobacterium naviforme Jungano 1909 into a novel genus as Zandiella naviformis gen. nov., comb. nov. and reclassification of Fusobacterium necrophorum subsp. funduliforme as later heterotypic synonym of Fusobacterium necrophorum subsp. necrophorum and Fusobacterium equinum as later heterotypic synonym of Fusobacterium Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-02-12 Mehdi Fatahi-Bafghi
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In vivo application of potent probiotics for enhancing potato growth and controlling Ralstonia solanacearum and Fusarium oxysporum infections Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-02-09 Ahmed Hamdy Abdel-Moghies, Motaz Hassan El-Sehrawy, Abeer Emam Zakaria, Shimaa Mohamed Fahmy
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Paenibacillus lacisoli sp. nov., a mesotrione-degrading strain isolated from lakeside soil Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-02-08 Qimiao Xu, Bin Liu, Yingying Wan, Xueting Jiang, Le Chen, Dongmei Mao, Gang Chen, Dan Cheng, Jian He, Qirong Shen
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Streptomyces cathayae sp. nov., an endophytic actinobacterium from the root tissue of Cathaya argyrophylla Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-02-06
Abstract An endophytic actinobacterium, designated strain HUAS 5T, was isolated from the root tissue of Cathaya argyrophylla collected in Chenzhou city of Hunan Province, PR China. This strain produced grey aerial mycelium that differentiated into spiral spore chains with spiny-surfaced ellipsoidal spores on Gause's synthetic No. 1 medium. Strain HUAS 5T grew well on Gause's synthetic No. 1, Reasoner'2
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Phocaeicola acetigenes sp. nov., producing acetic acid and iso-butyric acid, isolated faeces from a healthy human Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-02-01 Hyo Eun Do, Young Bong Ha, Ji-Sun Kim, Min Kuk Suh, Han Sol Kim, Mi Kyung Eom, Ju Huck Lee, Seung-Hwan Park, Se Won Kang, Dong Ho Lee, Hyuk Yoon, Je Hee Lee, Jung-Sook Lee
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Alteromonas arenosi sp. nov., a novel bioflocculant-producing bacterium, isolated from intertidal sand Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-01-27
Abstract A novel Gram-stain-negative, strictly aerobic and bioflocculant-producing bacterium, designated as ASW11-36T, was isolated from an intertidal sand collected from coastal areas of Qingdao, PR China. Growth occurred at 15–40 °C (optimum, 30 °C), pH 7.0–9.0 (optimum, pH 7.5) and with 1.5–7.0% (w/v) NaCl (optimum, 2.5–3.0%). In the whole-cell fatty acid pattern prevailed C16:0 and summed feature
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Devosia aquimaris sp. nov., isolated from seawater of the Changjiang River estuary of China Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-01-27 Mingyan Lai, Yurong Qian, Yue-Hong Wu, Chenhua Han, Qian Liu
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Uncovering the biotechnological capacity of marine and brackish water Planctomycetota Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-01-23 Inês R. Vitorino, Eugénia Pinto, Jesús Martín, Thomas A. Mackenzie, Maria C. Ramos, Pilar Sánchez, Mercedes de la Cruz, Francisca Vicente, Vítor Vasconcelos, Fernando Reyes, Olga M. Lage
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Antifungal activities of vineyard-habitat wild yeast for grape gray-mold disease and its effects on spontaneous winemaking Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-01-23 Dagula Hu, Naoko Maeno, Noriko Minami, Soichiro Takahashi, Kuniko Yoshida, Katsuki Ohtani, Yasuhiro Funatsu, Ryosuke Kondo, Akihiro Yamaguchi
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Polyphasic characterization and genomic insights into Nocardioides turkmenicus sp. nov. isolated from a desert soil Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-01-23 Hayrettin Saygin, Kiymet Guven, Demet Cetin, Nevzat Sahin
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Blastobotrys nigripullensis, a new yeast species isolated from a fungal outbreak on an ancient Roman shipwreck in the Netherlands Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-01-13 Cobus M. Visagie, Martin Meijer, Bart Kraak, Marizeth Groenewald, Jos Houbraken, Bart Theelen, Yardeni Vorst, Teun Boekhout
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Helicovermis profundi gen. nov., sp. nov., a novel mesophilic, asporogenous bacterium within the Clostridia isolated from a deep-sea hydrothermal vent chimney Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-01-13 Urara Miyazaki, Daiki Mizutani, Yurina Hashimoto, Akihiro Tame, Shigeki Sawayama, Junichi Miyazaki, Ken Takai, Satoshi Nakagawa
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Genomic and morphological characterization of a new Thiothrix species from a sulfide hot spring of the Zmeinaya bay (Northern Baikal, Russia) Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-01-13 S. M. Chernitsyna, I. S. Elovskaya, S. V. Bukin, Yu. S. Bukin, T. V. Pogodaeva, D. A. Kwon, T. I. Zemskaya
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Description and genomic characterization of Cohnella caldifontis sp. nov., isolated from hot springs in Yunnan province, south-west China Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-01-08 Ming-Xian Xiang, Cui-Ping Miao, Dian-Yan Zhang, Juan Wang, Yi-Qing Li, Min Yin, ShuKun Tang
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Xanthomonas chitinilytica sp. nov., a novel chitinolytic bacterium isolated from a microbial fermentation bed material Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-01-08 Xiaodong Liu, Xin Liu, Zhenshan Deng, Xiaolong He, Yingying Jiang
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Jatrophihabitans cynanchi sp. nov., isolated from rhizosphere soil of Cynanchum wilfordii Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-01-08 Min Kuk Suh, Ji-Sun Kim, Mi Kyung Eom, Han Sol Kim, Hyo Eun Do, Yong Kook Shin, Jung- Sook Lee
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Nocardioides jiangxiensis sp. nov., a novel actinobacterium isolated from lakeside soil, exhibiting the biosynthesis potential of mycofactocin Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-01-08 Yingying Wan, Tianli Sun, Guangwen Huang, Bance Tu, Mingzhu Huang, Xuelan Chen, Bin Liu, Jian He
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Bioactivity and genome analysis of Bacillus amyloliquefaciens GL18 isolated from the rhizosphere of Kobresia myosuroides in an alpine meadow Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-01-08 L. Chen, Y. L. Xie, X. H. Wu, L. L. Wu, J. Yang, Y. Gao, Y. Mi, F. Yang
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Bacterial community composition in the Northern Gulf of Mexico intertidal sediment bioturbated by the ghost shrimp Lepidophthalmus louisianensis Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-01-08 Nihar R. Deb Adhikary, Paul L. Klerks, Andrei Y. Chistoserdov
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Edible plant oil (EPO)-consumption activity of the isolate Fusarium keratoplasticum EN01 and other relative Fusarium species Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-01-03 Eiko Nishiyama, Ryo Nagata, Akikazu Ando, Akihiro Saito
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Distribution and conservation of simple sequence repeats in plant pathogenic species of Zymoseptoria and development of genomic resources for its orphaned species Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-01-03 Mohd Adnan Kausar, Jitendra Narayan, Preeti Agarwal, Pallavi Singh, Ruba Mustafa Elsaid Ahmed, Amel Bakri Mohammed El-Hag, Amany Mohammed Khalifa, Nuha Abdel Rahman Khalil Mohammed, Rajeev Singh, Sahil Mahfooz
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Recent progress in the characterization and application of exo-electrogenic microorganisms Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-01-03 Chamindu Jayathilake, Gayani Piyumika, Zumaira Nazeer, Nalin Wijayawardene, Shalini Rajakaruna, Jaturong Kumla, Eustace Fernando
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Bacterial community and culturable actinomycetes of Phyllostachys viridiglaucescens rhizosphere Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-01-03 Anna Kachor, Stepan Tistechok, Yuriy Rebets, Victor Fedorenko, Oleksandr Gromyko
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Description of Nesterenkonia aerolata sp. nov., an actinobacterium isolated from air of manufacturing shop in a pharmaceutical factory Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-01-03 Ming-Hui Song, Wen-Long Ma, Ning Zhang, Wei He, Hong-Chuan Wang, Shuang Wang, Yi-Ling Fan, Dao-Feng Zhang
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Devosia lacusdianchii sp. nov., an attached bacterium inhibited by metabolites from its symbiotic Microcystis Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-01-03
Abstract A novel alphaproteobacterial strain JXJ CY 41T was isolated from a culture mass of Microcystis, collected from Lake Dianchi, south-west, China. Strain JXJ CY 41T was gram-strain-negative, aerobic, motile, with rod-shaped cells (0.4–1.0 × 1.7–3.5 μm). It was positive for catalase and starch hydrolysis, negative for oxidase and hydrolysis of Tweens (20, 40, and 80). Growth occurred at 10–44 °C
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Nocardioides limicola sp. nov., an alkaliphilic alkane degrading bacterium isolated from oilfield alkali-saline soil Antonie van Leeuwenhoek (IF 2.6) Pub Date : 2024-01-03 Lin Zhu, Biyue Yang, Wenjun Guo, Xinyu Hu, Shenkui Liu, Xiang Xiao, Wei Wei