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Evaluation of false-positive Rhodotorula detections by a multiplex PCR-based fungal panel performed on positive blood culture bottles J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-04-17 Robert Hamilton-Seth, Vincent Streva, Natalie Gammel, Victoria L. Campodónico, Patricia J. Simner, Sean X. Zhang, Karen C. Carroll
Rhodotorula spp. are common environmental organisms and opportunistic human pathogens capable of causing invasive disease in immunocompromised patients (1–3). The GenMark ePlex Fungal Panel is a multiplex molecular panel that detects fungal pathogens from a positive blood culture bottle and includes targets for Rhodotorula spp. (Rhodotorula araucariae, Rhodotorula glutinis, Rhodotorula graminis, Rhodotorula
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Development of advanced control material for reverse transcription-mediated bacterial nucleic acid amplification tests J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-04-17 Janessa D. Lewis, Stephen J. Salipante
Although DNA-based nucleic acid amplification tests (NAATs) presently comprise the dominant molecular detection methods for bacteria, RNA-based NAATs are beginning to be developed and adopted (1–3). RNA-based microbial NAATs have demonstrated advantages over DNA-based methods in their specificity for live bacteria (1, 4–8) and enhanced sensitivity resulting from signal amplification of highly transcribed
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Development of an automated amplicon-based next-generation sequencing pipeline for rapid detection of bacteria and fungi directly from clinical specimens J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-04-16 Lucas J. Osborn, John Fissel, Samantha Gomez, Javier Mestas, Jessica Flores-Vazquez, Jaehyeon Lee, Hesamedin Hakimjavadi, Cristina Costales, Jennifer Dien Bard
To our knowledge, this represents the first application of an automated sequencing and bioinformatics pipeline in an exclusively pediatric population. Next-generation sequencing is time-consuming, labor-intensive, and requires experienced personnel; ...
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Biographical Feature: Charles Y. Chiu, M.D., Ph.D. J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-04-15 Erik Munson
“...I ended up programming a new method to analyze neuronal spike patterns, and we published a paper. It was my very first paper and was published in Science (1). As I was still a high school student at the time, I couldn’t write it although this was my project. Instead, my principal investigator Dr. Siegel was the first author, and I was the last, which was the opposite of what you normally see in
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Retraction for Waters et al., “Genotyping and Phenotyping of Beta2-Toxigenic Clostridium perfringens Fecal Isolates Associated with Gastrointestinal Diseases in Piglets J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-04-12 Michael WatersAmanda SavoieHelen S. GarmoryDawn BueschelMichel R. PopoffJ. Glenn SongerRichard W. TitballBruce A. McClaneMahfuzur R. Sarker
Journal of Clinical Microbiology, Ahead of Print.
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Retraction for Waters et al., “Regulated Expression of the Beta2-Toxin Gene (cpb2) in Clostridium perfringens Type A Isolates from Horses with Gastrointestinal Diseases” J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-04-12 Michael WatersDeepa RajuHelen S. GarmoryMichel R. PopoffMahfuzur R. Sarker
Journal of Clinical Microbiology, Ahead of Print.
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Dynamics and prognostic value of plasma cell-free DNA PCR in patients with invasive aspergillosis and mucormycosis J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-04-11 Angel MorenoJordan MahIndre BudvytieneDora Y. HoHayden T. SchwenkNiaz Banaei1Department of Pathology, Stanford University School of Medicine, Stanford, California, USA2Clinical Microbiology Laboratory, Stanford Health Care, Palo Alto, California, USA3Division of Infectious Diseases and Geographic Medicine, Department of Medicine, Stanford University, Stanford, California, USA4Division of Infectious
Journal of Clinical Microbiology, Ahead of Print.
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Performance of two modified two-tier algorithms for the serologic diagnosis of Lyme disease J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-04-10 Marie L. Landry, Sajjad Hassan, Bruce G. Rottmann, Stacey J. Pesak, Michael Ordazzo, Michael Skrzyniarz, Steven Deponte, David R. Peaper
The laboratory diagnosis of Lyme disease relies upon the detection of antibodies to Borrelia species. Standard two tier testing (STTT) methods rely upon immunoblots which have clinical and technical limitations. Modified two-tier testing (MTTT) methods ...
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Answer to April 2024 Photo Quiz J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-04-10 Alfredo Maldonado-Barrueco, Sol María San José-Villar, Julio García-Rodríguez, Marina Alguacil-Guillén, Álvaro López-Janeiro, Elena Trigo-Esteban, Marta Díaz-Menéndez, Guillermo Ruiz-Carrascoso
Read the full article for the answer.
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Photo Quiz: Mmm … delicious ceviche from Ecuador! J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-04-10 Alfredo Maldonado-Barrueco, Sol María San José-Villar, Julio García-Rodríguez, Marina Alguacil-Guillén, Álvaro López-Janeiro, Elena Trigo-Esteban, Marta Díaz-Menéndez, Guillermo Ruiz-Carrascoso
A 57-year-old migrant female from Manta (Ecuador) arrived in Spain in 2001. The patient came to the emergency department at University Hospital La Paz (Madrid, Spain) 6 months after her last trip for 1 month to Ecuador in 2023. The patient showed asthmatic exacerbation, dorsalgia with chest pain, dry chronic cough of 2 months of progression, and weight loss. The patient reported that, unlike other
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The Brief Case: Incidental finding of Brucella abortus bacteremia in a patient with urinary tract infection J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-04-10 Vincent A. Streva, Jacqueline Weinstein, Cherylann Jankowski-Romano, Nonso Osakwe, Scott Duong, Stefan Juretschko, Jamie K. Lemon
A previously healthy 17-year-old female with no prior medical history presented to the emergency department (ED) of a community hospital with 2-day history of fever, back pain, headache, and dysuria. The patient denied vomiting, diarrhea, abdominal pain, chest pain, or shortness of breath. Vital signs were unremarkable and there were no significant findings on physical exam. Blood work was unremarkable
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Erratum for Brown-Elliott et al., "Emergence of Inducible Macrolide Resistance in Mycobacterium chelonae Due to Broad-Host-Range Plasmid and Chromosomal Variants of the Novel 23S rRNA Methylase Gene, erm(55)" J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-04-04 Barbara A. Brown-Elliott, Richard J. Wallace, Nancy L. Wengenack, Sean D. Workman, Andrew D. S. Cameron, Georgie Bush, M. Dolores Hughes, Stephanie Melton, Bibiana Gonzalez-Ramirez, Eliana Rodriguez, Kavya Somayaji, Courtney Klapperich, Mary Viers, Ayooluwa J. Bolaji, Emma Rempel, David C. Alexander
Volume 61, no. 7, e00428-23, 2023, https://doi.org/10.1128/jcm.00428-23. Table 2 should appear as shown in this erratum. Data in the last four columns were misaligned.
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Development and evaluation of an artificial intelligence for bacterial growth monitoring in clinical bacteriology J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-04-04 Damien Jacot, Shklqim Gizha, Cedrick Orny, Mathieu Fernandes, Carmelo Tricoli, Raphael Marcelpoil, Guy Prod'hom, Jean-Marc Volle, Gilbert Greub, Antony Croxatto
Clinical bacteriology laboratories have experienced a revolution with the introduction of fully automated systems (1–6). Inoculation, plate transport, and image digitalization were among the first innovations with the reading now performed on digital images where microbiologists select microbial colonies for subsequent follow-up actions (7, 8). Development of intelligent algorithms for plates reading
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An evolution of Nanopore next-generation sequencing technology: implications for medical microbiology and public health J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-04-02 Heba H. Mostafa1Department of Pathology, Division of Medical Microbiology, Johns Hopkins School of Medicine, Baltimore, Maryland, USA, Daniel D. Rhoads
Journal of Clinical Microbiology, Ahead of Print.
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Automated detection of methicillin-resistant Staphylococcus aureus with the MRSA CHROM imaging application on BD Kiestra Total Lab Automation System J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-04-01 Erin McElvania, Susan Mindel, Jaap Lemstra, Karin Brands, Parul Patel, Caryn E. Good, Didier Morel, Cedrick Orny, Jean-Marc Volle, Marc Desjardins, Daniel Rhoads
As one of the most common causative organisms of healthcare-associated infections (1), methicillin-resistant Staphylococcus aureus (MRSA) is of particular concern in hospital settings. Nasal colonization by MRSA is a widely recognized risk factor for the development of hospital-acquired MRSA infections and transmission to other individuals (2, 3), and about 5% of inpatient populations carry MRSA in
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CMV-RNAemia as new marker of active viral replication in transplant recipients J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-03-27 Giulia PiccirilliFederica LannaLiliana GabrielliVincenzo MottaMartina FranceschielloAlessia CantianiMatteo PavoniMarta LeoneEva Caterina BorgattiDino GibertoniRenato PascaleMaddalena GiannellaFrancesca BonifaziTiziana Lazzarotto1Microbiology Unit, IRCCS Azienda Ospedaliero-Universitaria di Bologna, Bologna, Italy2Department of Medical and Surgical Sciences, Alma Mater Studiorum, University of Bologna
Journal of Clinical Microbiology, Ahead of Print.
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Sensitivity and specificity of the new Bio-Rad HIV screening test, Access HIV combo V2 J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-03-27 Vincent GuiraudYann CiczoraMuriel CardonaChristine DeferSandrine GréaumeDavid NoguesAgnès Gautheret-Dejean1AP-HP, Hôpitaux Universitaires La Pitié Salpêtrière-Charles Foix, Service de Virologie, Paris, France2Bio-Rad Laboratories, Steenvoorde, France3Bio-Rad Laboratories, Marnes-La-Coquette, France4Etablissement Français du Sang (EFS) Hauts de France—Normandie, Lille, France5Etablissement Français
Journal of Clinical Microbiology, Ahead of Print.
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Performance evaluation of the high-throughput quantitative Alinity m BK virus assay J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-03-25 Julie W. Hirschhorn, Mark M. Sasaki, April Kegl, Tanjina Akter, Tanisha Dickerson, Momka Narlieva, Nhi Nhan, Tianxi Liu, Patricia Jim, Stephen Young, Erika Orner, Phyu Thwe, Danijela Lucic, D. Yitzchak Goldstein
BK virus (BKV) in transplant patients can lead to adverse health consequences. Viral load monitoring is important in post-transplant patient care. This study evaluates the Alinity m BKV assay with currently available assays.
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A novel hybridization capture method for direct whole genome sequencing of clinical specimens to inform Legionnaires’ disease investigations J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-03-21 Phillip Weeber, Navjot Singh, Pascal Lapierre, Lisa Mingle, Danielle Wroblewski, Elizabeth J. Nazarian, Wolfgang Haas, Don Weiss, Kimberlee A. Musser
Legionnaires’ disease (LD) is a severe and potentially fatal type of pneumonia primarily caused by inhalation of Legionella-contaminated aerosols from man-made water or cooling systems. LD remains extremely underdiagnosed as it is an uncommon form of ...
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The modern alchemy of clinical pathology: turning the output of microbiology laboratory operations into gold J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-03-20 Sanjat Kanjilal1Department of Population Medicine, Harvard Pilgrim Healthcare Institute and Harvard Medical School, Boston, Massachusetts, USA2Division of Infectious Diseases, Brigham & Women's Hospital, Boston, Massachusetts, USA, Romney M. Humphries
Journal of Clinical Microbiology, Ahead of Print.
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Performance evaluation of machine-assisted interpretation of Gram stains from positive blood cultures J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-03-20 Christian WalterChristoph WeissertEve GizewskiIrene BurckhardtHeiko MannspergerSiegfried HänselmannWinfried BuschStefan ZimmermannOliver Nolte1Department of Infectious Diseases, Medical Microbiology and Hygiene, Medical Faculty Heidelberg, Heidelberg University, Heidelberg, Germany2University Hospital Heidelberg, Heidelberg, Germany3Division of Human Microbiology, Centre for Laboratory Medicine, St
Journal of Clinical Microbiology, Ahead of Print.
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Identification rate of Legionella species in non-purulent sputum culture is comparable to that in purulent sputum culture in Legionella pneumonia J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-03-19 Akihiro ItoTadashi IshidaHiromasa TachibanaYosuke NakanishiMasanori KawatakiAkio YamazakiYasuyoshi Washio1Department of Respiratory Medicine, Ohara Healthcare Foundation, Kurashiki Central Hospital, Kurashiki, Japan2Department of Respiratory Medicine, National Hospital Organization, Minami Kyoto Hospital, Kyoto, Japan3Department of Respiratory Medicine, Shiga University of Medical Science, Otsu, Japan4Research
Journal of Clinical Microbiology, Ahead of Print.
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Evaluation of the Vitek 2 system for antifungal susceptibility testing of Candida auris using a representative international panel of clinical isolates: overestimation of amphotericin B resistance and underestimation of fluconazole resistance J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-03-19 Maria SiopiIoannis PachoulisSevasti LeventakiBram SpruijtenburgJacques F. MeisSpyros PournarasGeorgia VrioniAthanasios TsakrisJoseph Meletiadis1Clinical Microbiology Laboratory, “Attikon” University General Hospital, Medical School, National and Kapodistrian University of Athens, Athens, Greece2Molecular Microbiology and Immunology Laboratory, Department of Biomedical Sciences, University of West Attica
Journal of Clinical Microbiology, Ahead of Print.
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Diagnostic accuracy of tongue swab testing on two automated tuberculosis diagnostic platforms, Cepheid Xpert MTB/RIF Ultra and Molbio Truenat MTB Ultima J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-03-14 Rachel C. WoodAngelique K. LuabeyaRane B. DragovichAlaina M. OlsonKatherine A. LochnerKris M. WeigelRenée CodsiHumphrey MulengaMargaretha de VosMikashmi KohliAdam Penn-NicholsonMark HatherillGerard A. Cangelosi1Department of Environmental and Occupational Health Sciences, University of Washington, Seattle, Washington, USA2South African Tuberculosis Vaccine Initiative, Institute of Infectious Disease
Journal of Clinical Microbiology, Ahead of Print.
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Evaluation of analyte-specific reagents for the direct detection of Pneumocystis jirovecii J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-03-13 Samantha R. GiffenElizabeth StoepplerAvian ElliottMelissa B. Miller1McLendon Clinical Laboratories, University of North Carolina Medical Center, Chapel Hill, North Carolina, USA2Department of Pathology and Laboratory Medicine, University of North Carolina Chapel Hill School of Medicine, Chapel Hill, North Carolina, USA, Daniel J. Diekema
Journal of Clinical Microbiology, Ahead of Print.
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Answer to March 2024 Photo Quiz J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-03-13 Tristan R. GramsBlaine A. MathisonDonald RoseberryMarc Roger Couturier1Department of Pathology, University of Utah, Salt Lake City, Utah, USA2Institute for Clinical and Experimental Pathology, ARUP Laboratories, Salt Lake City, Utah, USA3Christus Health, Winnsboro, Texas, USA4ARUP Laboratories, Salt Lake City, Utah, USA, Bobbi S. Pritt
Journal of Clinical Microbiology, Volume 62, Issue 3, March 2024.
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Photo Quiz: An ear-resistible occupant in a 73-year-old patient J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-03-13 Tristan R. GramsBlaine A. MathisonDonald RoseberryMarc Roger Couturier1Department of Pathology, University of Utah, Salt Lake City, Utah, USA2Institute for Clinical and Experimental Pathology, ARUP Laboratories, Salt Lake City, Utah, USA3Christus Health, Winnsboro, Texas, USA4ARUP Laboratories, Salt Lake City, Utah, USA, Bobbi S. Pritt
Journal of Clinical Microbiology, Volume 62, Issue 3, March 2024.
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The Brief Case: A case of bloodstream infection with Corynebacterium kroppenstedtii in an infant J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-03-13 Samantha R. GiffenKevin Alby1University of North Carolina Health Care, Clinical Microbiology Laboratory, Chapel Hill, North Carolina, USA, Carey-Ann D. Burnham
Journal of Clinical Microbiology, Volume 62, Issue 3, March 2024.
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Multicenter evaluation of the Toxoplasma gondii Real-TM (Sacace) kit performance for the molecular diagnosis of toxoplasmosis J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-03-12 Juliette GuitardMarie-Pierre Brenier-PinchartEmmanuelle Varlet-MarieFrédéric DalleCelia RougesNicolas ArgyJulie BonhommeAgathe CapitaineHélène GuéganRose-Anne LavergneMarie-Laure DardéHervé PellouxFlorence Robert-GangneuxHélène YeraYvon Sterkers1Sorbonne University, INSERM, Centre de Recherche Saint-Antoine, Assistance Publique-Hôpitaux de Paris, Saint-Antoine Hospital Parasitology-Mycology Laboratory
Journal of Clinical Microbiology, Ahead of Print.
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Clinical utility of multiplex PCR in the detection of pathogens from sterile body fluids J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-03-12 Christina R. CoxKristin N. WeghornKatie RugerMargaret V. Powers-FletcherEleanor A. PowellJoel E. Mortensen1Department of Internal Medicine, University of Cincinnati College of Medicine, Cincinnati, Ohio, USA2Department of Pathology and Laboratory Medicine, Cincinnati Children’s Hospital Medical Center, Cincinnati, Ohio, USA3Department of Pathology and Laboratory Medicine, University of Cincinnati College
Journal of Clinical Microbiology, Ahead of Print.
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The integration of Coxiella burnetii PCR testing in serum into the diagnostic algorithm of suspected acute Q fever in an endemic setting J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-03-12 Nesrin Ghanem-ZoubiMona Mustafa-HellouMaram ZahranLiat GazitRaya ShalaginovHalima Dabaja-YounisMoran Szwarcwort1Infectious Diseases Institute, Rambam Health Care Campus, Haifa, Israel2The Ruth and Bruce Rappaport Faculty of Medicine, Technion, Israel Institute of Technology, Haifa, Israel3Department of Medicine A, Rambam Health Care Campus, Haifa, Israel4Microbiology Laboratory, Rambam Health Care
Journal of Clinical Microbiology, Ahead of Print.
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Assessment of the performance of the plasma separation card for HIV-1 viral load monitoring in South Africa J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-03-12 Lucy ChimoyiLucia HansMatthew OladimejiGurpreet KindraKaridia DialloKassahun AyalewGeoffrey K. SetsweSergio Carmona1Implementation Research Division, The Aurum Institute, Johannesburg, South Africa2Department of Molecular Medicine and Hematology, National Health Laboratory Service, Johannesburg, South Africa3Department of Molecular Medicine and Hematology, Faculty of Health Sciences, University of
Journal of Clinical Microbiology, Ahead of Print.
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Targeted sequencing from cerebrospinal fluid for rapid identification of drug-resistant tuberculous meningitis J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-03-11 Trinh Thi Bich TramLe Pham Tien TrieuLe Thanh Hoang NhatDo Dang Anh ThuNguyen Le QuangNguyen Duc BangTran Thi Hong ChauGuy E. ThwaitesTimothy M. WalkerVu Thi Ngoc HaNguyen Thuy Thuong Thuong1Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam2Pham Ngoc Thach Hospital for Tuberculosis and Lung Disease, Ho Chi Minh City, Vietnam3Centre for Tropical Medicine and Global Health, Nuffield
Journal of Clinical Microbiology, Ahead of Print.
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Cefazolin as a predictor of urinary cephalosporin activity in indicated Enterobacterales J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-03-08 Alexandra L. Bryson, Amira Bhalodi, Rachael M. Liesman, Amy J. Mathers
Starting in the 1970s, cephalothin susceptibility testing was used to predict the susceptibility of oral cephalosporins; however, more recent data demonstrated that cefazolin is a more accurate proxy than cephalothin for uncomplicated urinary tract infections (uUTIs) caused by Escherichia coli, Klebsiella pneumoniae, and Proteus mirabilis (1–3). As a result, the Clinical Laboratory Standards Institute
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Prospective observational pilot study of the T2Resistance panel in the T2Dx system for detection of resistance genes in bacterial bloodstream infections J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-03-08 Thomas J. WalshAntonella MencacciRiccardo PaggiEvangelia DoukaCharikleia VrettouRoger SmithOscar Guzman1Center for Innovative Therapeutics and Diagnostics, Richmond, Virginia, USA2Departments of Medicine and Microbiology & Immunology, University of Maryland School of Medicine, Baltimore, Maryland, USA3Microbiology and Clinical Microbiology, Department of Medicine and Surgery, University of Perugia
Journal of Clinical Microbiology, Ahead of Print.
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Strengthening Bordetella pertussis genomic surveillance by direct sequencing of residual positive specimens J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-03-06 Yanhui PengMargaret M. WilliamsLingzi XiaoliAshley SimonHeather FuestonMaria L. TondellaMichael R. Weigand1Division of Bacterial Diseases, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA2ASRT Inc., Atlanta, Georgia, USA, John P. Dekker
Journal of Clinical Microbiology, Ahead of Print.
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Reply to Kidd et al., “Inconsistencies within the proposed framework for stabilizing fungal nomenclature risk further confusion” J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-03-05 Sybren de HoogThomas J. WalshSarah A. AhmedAna Alastruey-IzquierdoBarbara D. AlexanderMaiken Cavling ArendrupEsther BabadyFeng-Yan BaiJoan-Miquel Balada-LlasatAndrew BormanAnuradha ChowdharyAndrew ClarkRobert C. ColgroveOliver A. CornelyTanis C. DinglePhilippe J. DufresneJeff FullerJean-Pierre GangneuxConnie GibasHeather GlasgowYvonne GraserJacques GuillotAndreas H. GrollGerhard HaaseKimberly HansonAmanda
Journal of Clinical Microbiology, Ahead of Print.
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Inconsistencies within the proposed framework for stabilizing fungal nomenclature risk further confusion J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-03-05 Sarah E. KiddFerry HagenCatriona L. HallidayAlireza AbdolrasouliTeun BoekhoutPedro W. CrousDavid H. EllisJuliet ElvyGraeme N. ForrestMarizeth GroenewaldRosane C. HahnJos HoubrakenAnderson M. RodriguesJames ScottTania C. SorrellRichard C. SummerbellClement K. M. TsuiAndrey YurkovSharon C.-A. Chen1National Mycology Reference Centre, SA Pathology, Adelaide, South Australia, Australia2School of Biological
Journal of Clinical Microbiology, Ahead of Print.
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Closing the gap: Oxford Nanopore Technologies R10 sequencing allows comparable results to Illumina sequencing for SNP-based outbreak investigation of bacterial pathogens J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-03-05 Bert BogaertsAn Van den BosscheBavo VerhaegenLaurence DelbrassinneWesley MattheusStéphanie NouwsMaxime GodfroidStefan HoffmanNancy H. C. RoosensSigrid C. J. De KeersmaeckerKevin Vanneste1Transversal activities in Applied Genomics, Sciensano, Brussels, Belgium2Bacterial Diseases, Sciensano, Brussels, Belgium3Foodborne Pathogens, Sciensano, Brussels, Belgium, Daniel D. Rhoads
Journal of Clinical Microbiology, Ahead of Print.
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At-home testing for respiratory viruses: a minireview of the current landscape J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-03-04 Laura SmyNathan A. LedeboerMacy G. Wood1Department of Pathology, Medical College of Wisconsin, Milwaukee, Wisconsin, USA, Romney M. Humphries
Journal of Clinical Microbiology, Ahead of Print.
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Performance of eight commercial immunoassays for the detection of cytomegalovirus-specific IgM antibodies in pregnancy – no test fits all needs J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-03-01 Anja DaimingerRobert BeckSimone ExlerUwe BarteltMartin Enders1Laboratory Prof. Gisela Enders and Colleagues, MVZ, Stuttgart, Germany, Elitza S. Theel
Journal of Clinical Microbiology, Ahead of Print.
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Antimicrobial susceptibilities of Campylobacter fetus: report from a reference laboratory J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-02-29 Ming May ZhangTanner A. MeltonHaris AkhtarAditya ShahAudrey N. SchuetzJosh ClementRyan W. Stevens1Department of Pharmacy Services, Mayo Clinic, Rochester, Minnesota, USA2Division of Public Health, Infectious Diseases and Occupational Medicine, Mayo Clinic, Rochester, Minnesota, USA3Division of Clinical Microbiology, Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota
Journal of Clinical Microbiology, Ahead of Print.
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Utilizing cost-effective portable equipment to enhance COVID-19 variant tracking both on-site and at a large scale J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-02-28 Sung Yong ParkGina FaraciPamela WardHa Youn Lee1Department of Molecular Microbiology and Immunology, Keck School of Medicine, University of Southern California, Los Angeles, California, USA2Department of Clinical Pathology, Keck School of Medicine, University of Southern California, Los Angeles, California, USA, Alexander Mellmann
Journal of Clinical Microbiology, Ahead of Print.
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Rapid high-throughput processing of tissue samples for microbiological diagnosis of periprosthetic joint infections using bead-beating homogenization J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-02-28 Nathalie JazmatiCarolin LieboldChristoph OfferhausAnnika VolkenandStefan GroteJuliane PöpselBarbara Körber-IrrgangThomas HoppeHilmar Wisplinghoff1Wisplinghoff Laboratories, Cologne, Germany2Institute for Medical Microbiology, Immunology and Hygiene, University of Cologne, Cologne, Germany3Department of Orthopedic Surgery and Sports Traumatology, Witten/Herdecke University, Witten, Germany4Sana Medical
Journal of Clinical Microbiology, Ahead of Print.
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A robust, scalable, and cost-efficient approach to whole genome sequencing of RSV directly from clinical samples J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-02-26 Sophie KöndgenDjin-Ye OhAndrea ThürmerSomayyeh SedaghatjooLivia V. PatronoSébastien Calvignac-SpencerBarbara BiereThorsten WolffRalf DürrwaldStephan FuchsJanine Reiche1Influenza and Other Respiratory Viruses, Consultant Laboratory for RSV, PIV and HMPV, Robert Koch-Institute, Berlin, Germany2Genome Competence Center, Robert Koch-Institute, Berlin, Germany3Epidemiology of highly pathogenic microorganisms
Journal of Clinical Microbiology, Ahead of Print.
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The 2024 ASM Awards and Prize Program—recognizing excellence in the microbiological sciences J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-02-23 Irving NachamkinN. Esther Babady1Member and Past Chair, Subcommittee on Awards, American Academy of Microbiology, Washington, DC, USA2Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA3Member, Subcommittee on Awards, American Academy of Microbiology, Washington, DC, USA4Department of Pathology and Laboratory Medicine
Journal of Clinical Microbiology, Ahead of Print.
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This is giving me a complex: a practical attempt to streamline nontuberculous mycobacteria nomenclature for clinical purposes J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-02-23 Nancy L. WengenackBarbara A. Brown-ElliottNicole M. ParrishMax SalfingerChristine Y. TurenneRichard J. WallaceAdrian M. Zelazny1Division of Clinical Microbiology, Mayo Clinic, Rochester, Minnesota, USA2Mycobacteria/Nocardia Research Laboratory, University of Texas at Tyler Health Science Center, School of Medicine Tyler, Tyler, Texas, USA3Department of Pathology, Johns Hopkins University School of
Journal of Clinical Microbiology, Ahead of Print.
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Improved recovery of nontuberculous mycobacteria in culture with adjunctive use of a selective agar J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-02-23 Mikayla CaldwellJena TisdaleReeti Khare1Advanced Diagnostic Laboratories, National Jewish Health, Denver, Colorado, USA, Melissa B. Miller
Journal of Clinical Microbiology, Ahead of Print.
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Maternal and congenital human cytomegalovirus infection: laboratory testing for detection and diagnosis J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-02-23 Amy L. Leber1Departments of Pathology and Laboratory Medicine and Pediatrics, Nationwide Children’s Hospital, The Ohio State University Wexner Medical Center, Columbus, Ohio, USA, Romney M. Humphries
Journal of Clinical Microbiology, Ahead of Print.
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Clinical validation of loop-mediated isothermal amplification for the detection of Escherichia coli sequence type complex 131 J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-02-22 Gisele PeiranoL. Ricardo CastellanosYasufumi MatsumuraRyan ChaffeeDaniel Castañeda-MogollónDylan R. PillaiJohann D. D. Pitout1Cummings School of Medicine, University of Calgary, Calgary, Alberta, Canada2Alberta Precision Laboratories, Calgary, Alberta, Canada3Kyoto University Graduate School of Medicine, Kyoto, Japan4University of Pretoria, Pretoria, Gauteng, South Africa, Patricia J. Simner
Journal of Clinical Microbiology, Ahead of Print.
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Proceedings of the Clinical Microbiology Open 2022—assessing clinical laboratory and industry responses to COVID-19 pandemic testing capacity challenges (part 1) J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-02-20 David R. PeaperChristopher D. DoernSusan Sharp1Department of Laboratory Medicine, Yale School of Medicine, New Haven, Connecticut, USA2Department of Pathology, Virginia Commonwealth University Health System, Richmond, Virginia, USA3Herbert Wertheim College of Medicine, Florida International University, Miami, Florida, USA4Copan Diagnostics, Inc., Carlsbad, California, USA, Romney M. Humphries
Journal of Clinical Microbiology, Ahead of Print.
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Accuracy of quantitative viral secondary standards: a re-examination J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-02-21 R. T. HaydenY. SuL. TangH. ZhuZ. GuH. L. GlasgowS. S. SamA. M. Caliendo1Department of Pathology, St. Jude Children’s Research Hospital, Memphis, Tennessee, USA2Department of Biostatistics, St. Jude Children’s Research Hospital, Memphis, Tennessee, USA3Division of Infectious Diseases, Alpert Medical School of Brown University, Providence, Rhode Island, USA4Department of Medicine, Alpert Medical School
Journal of Clinical Microbiology, Ahead of Print.
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Psychodid flies and their implicated role in human myiasis and pseudomyiasis J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-02-16 Blaine A. MathisonIsai MadrizBobbi S. PrittGregory Curler1Institute for Clinical and Experimental Pathology, ARUP Laboratories, Salt Lake City, Utah, USA2Department of Pathology, University of Utah, Salt Lake City, Utah, USA3Department of Entomology and Plant Pathology, University of Tennessee, Knoxville, Tennessee, USA4Division of Clinical Microbiology, Mayo Clinic, Rochester, Minnesota, USA, Romney
Journal of Clinical Microbiology, Ahead of Print.
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Recommendation of a standardized broth microdilution method for antimicrobial susceptibility testing of Avibacterium paragallinarum and resistance monitoring J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-02-16 Franziska GütgemannAnnet HeuvelinkAnja MüllerYury ChurinRianne ButerArne JungAnneke FeberweeJeanine WiegelFranziska KummAnn Sophie BraunMin YueEdgardo Soriano-VargasStefan SwanepoelNadine BotteldoornMiranda KirchnerCorinna Kehrenberg1Institute for Veterinary Food Science, Faculty of Veterinary Medicine, Justus Liebig University Giessen, Giessen, Germany2Royal GD, Deventer, the Netherlands3Clinic for
Journal of Clinical Microbiology, Ahead of Print.
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Evaluation of the FluoroType Mycobacteria assay for identification of mycobacteria J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-02-13 Bruno LuukinenJenni AntikainenJanne AittoniemiTerhi Miikkulainen-LahtiHanne-Leena HyyryläinenAnu Pätäri-Sampo1Department of Clinical Microbiology, HUSLAB, HUS Diagnostic Center, University of Helsinki and Helsinki University Hospital, Helsinki, Finland2Department of Clinical Microbiology, Fimlab Laboratories, Tampere, Finland3Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland4Department
Journal of Clinical Microbiology, Ahead of Print.
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Answer to the Photo Quiz: Were those hyphae or pseudohyphae in blood culture? J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-02-14 Eugene Y. H. Yeung Vincent Deslandes Juthaporn Cowan 1 Division of Microbiology, Department of Pathology and Laboratory Medicine, University of Ottawa , Ottawa, Ontario, Canada 2 Department of Microbiology, Eastern Ontario Regional Laboratory Association (EORLA) , Ottawa, Ontario, Canada 3 The Ottawa Hospital Research Institute (OHRI) , Ottawa, Ontario, Canada 4 Division of Infectious Disease, Department
Journal of Clinical Microbiology, Volume 62, Issue 2, February 2024.
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Photo Quiz: Were those hyphae or pseudohyphae in blood culture? J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-02-14 Eugene Y. H. Yeung Vincent Deslandes Juthaporn Cowan 1 Division of Microbiology, Department of Pathology and Laboratory Medicine, University of Ottawa , Ottawa, Ontario, Canada 2 Department of Microbiology, Eastern Ontario Regional Laboratory Association (EORLA) , Ottawa, Ontario, Canada 3 The Ottawa Hospital Research Institute (OHRI) , Ottawa, Ontario, Canada 4 Division of Infectious Disease, Department
Journal of Clinical Microbiology, Volume 62, Issue 2, February 2024.
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The Brief Case: Dirofilaria species causing a subcutaneous nodule after a visit to the beach in Florida J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-02-14 Jonathan Wilcock Bobbi S. Pritt Andrew P. Norgan 1 Division of Clinical Microbiology, Department of Laboratory Medicine and Pathology, Mayo Clinic , Rochester, Minnesota, USA, Carey-Ann D. Burnham
Journal of Clinical Microbiology, Volume 62, Issue 2, February 2024.
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Molecular diagnosis of Cytomegalovirus infection: clinical performance of the Aptima transcription-mediated amplification assay toward conventional qPCR chemistry on whole blood samples J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-02-13 Paolo BottinoLisa PastroneElisa ZanottoFrancesca SidotiRossana CavalloCristina Costa1S.C. Microbiology and Virology U, A.O.U. “Città della Salute e della Scienza di Torino”, Turin, Italy, Elitza S. Theel
Journal of Clinical Microbiology, Ahead of Print.
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Multicenter evaluation of BioCode GPP for syndromic molecular detection of gastrointestinal pathogens from stool specimens J. Clin. Microbiol. (IF 9.4) Pub Date : 2024-02-08 Colleen KnothRomney HumphriesJ. Kristie JohnsonAnami PatelAmorce LimaSuzane SilbertJan Vinjé1Applied BioCode, Santa Fe Springs, California, USA2University of California Los Angeles Medical Center, Los Angeles, California, USA3Department of Pathology, University of Maryland School of Medicine, Baltimore, Maryland, USA4Le Bonheur Children’s Hospital, Memphis, Tennessee, USA5Tampa General Hospital, Tampa
Journal of Clinical Microbiology, Ahead of Print.