Coastal areas have been intensively urbanized in Asia, causing changes to the structure and function of intertidal macrobenthic communities. In this study, the intertidal assemblages on two natural rocky shores, two rocky shores disturbed by construction works, and two shores with mixed artificial seawalls and mudflats in the Dongtou Islands were studied. We examined the influence of coastal engineering by comparing macrobenthic community structures in different transects. The statistical results revealed significant differences between macrobenthic community structures in natural and influenced transects, although all the high tidal zones shared common species. The most common species on mudflats were opportunistic polychaetes; however, historical evidence suggests that the mudflats in Dongtou used to be dominated by Mollusca. We inferred that this change in community structure occurred when the seawalls were constructed five5 years previously. The macrobenthic community does not appear to have subsequently recovered. We also observed an absence of habitat-forming macroalgae in our study area, although similar investigation results revealed that they still prevail on an uninhabited island in Dongtou. The increasing disturbance caused by construction work may explain the decline in brown algae, which are mainly distributed in the low tidal zone.