Abstract
The cAMP-dependent protein kinase (PKA) pathway in Schizosaccharomyces pombe plays an important role in microtubule organization and chromosome segregation. Typically, loss of functional Pka1 induces sensitivity to the microtubule-destabilizing drug thiabendazole (TBZ) and chromosome mis-segregation. To determine the mechanism via which Pka1 is involved in these events, we explored the relevance of transcription factors by creating a double-deletion strain of pka1 and 102 individual genes encoding transcription factors. We found that rst2∆, tfs1∆, mca1∆, and moc3∆ suppressed the TBZ-sensitive phenotype of the pka1∆ strain, among which tfs1∆ was the strongest suppressor. All single mutants (rst2∆, tfs1∆, mca1∆, and moc3∆) showed a TBZ-tolerant phenotype. Tfs1 has two transcriptional domains (TFIIS and Zn finger domains), both of which contributed to the suppression of the pka1∆-induced TBZ-sensitive phenotype. pka1∆-induced chromosome mis-segregation was rescued by tfs1∆ in the presence of TBZ. tfs1 overexpression induced the TBZ-sensitive phenotype and a high frequency of chromosome mis-segregation, suggesting that the amount of Tfs1 must be strictly controlled. However, Tfs1-expression levels did not differ between the wild-type and pka1∆ strains, and the Tfs1-GFP protein was localized to the nucleus and cytoplasm in both strains, which excludes the direct regulation of expression and localization of Tfs1 by Pka1. Growth inhibition by TBZ in pka1∆ strains was notably rescued by double deletion of rst2 and tfs1 rather than single deletion of rst2 or tfs1, indicating that Rst2 and Tfs1 contribute independently to counteract TBZ toxicity. Our findings highlight Tfs1 as a key transcription factor for proper chromosome segregation.
Similar content being viewed by others
Data availability
Additional information is provided in the Supplementary Material.
References
Basi G, Schmid E, Maundrell K (1993) TATA box mutations in the Schizosaccharomyces pombe nmt1 promoter affect transcription efficiency but not the transcription start point or thiamine repressibility. Gene 123:131–136. https://doi.org/10.1016/0378-1119(93)90552-e
Beaudoin J, Ioannoni R, Normant V, Labbe S (2018) A role for the transcription factor Mca1 in activating the meiosis-specific copper transporter Mfc1. PLoS One 13:e0201861. https://doi.org/10.1371/journal.pone.0201861
Bernard P, Maure J-F, Partridge JF et al (2001) Requirement of heterochromatin for cohesion at centromeres. Science 294:2539–2542. https://doi.org/10.1126/science.1064027
Byrne SM, Hoffman CS (1993) Six git genes encode a glucose-induced adenylate cyclase activation pathway in the fission yeast Schizosaccharomyces pombe. J Cell Sci 105:1095–1100. https://doi.org/10.1242/jcs.105.4.1095
Cermakova K, Veverka V, Hodges HC (2023) The TFIIS N-terminal domain (TND): a transcription assembly module at the interface of order and disorder. Biochem Soc Trans 51:125–135. https://doi.org/10.1042/BST20220342
DeVoti J, Seydoux G, Beach D, McLeod M (1991) Interaction between ran1+ protein kinase and cAMP dependent protein kinase as negative regulators of fission yeast meiosis. EMBO J 10:3759–3768
Ekwall K, Thon G (2017) Spore analysis and tetrad dissection of Schizosaccharomyces pombe. Cold Spring Harb Protoc 2017:pdb prot091710. https://doi.org/10.1101/pdb.prot091710
Forsburg SL (1993) Comparison of Schizosaccharomyces pombe expression systems. Nucleic Acids Res 21:2955–2956
Goldar MM, Jeong HT, Tanaka K et al (2005) Moc3, a novel Zn finger type protein involved in sexual development, ascus formation, and stress response of Schizosaccharomyces pombe. Curr Genet 48:345–355. https://doi.org/10.1007/s00294-005-0028-z
Gupta DR, Paul SK, Oowatari Y et al (2011a) Complex formation, phosphorylation, and localization of protein kinase A of Schizosaccharomyces pombe upon glucose starvation. Biosci Biotechnol Biochem 75:1456–1465. https://doi.org/10.1271/bbb.110125
Gupta DR, Paul SK, Oowatari Y et al (2011b) Multistep regulation of protein kinase A in its localization, phosphorylation and binding with a regulatory subunit in fission yeast. Curr Genet 57:353–365. https://doi.org/10.1007/s00294-011-0354-2
Hálová L, Du W, Kirkham S et al (2013) Phosphorylation of the TOR ATP binding domain by AGC kinase constitutes a novel mode of TOR inhibition. J Cell Biol 203:595–604. https://doi.org/10.1083/jcb.201305103
Hayashi I, Ikura M (2003) Crystal structure of the amino-terminal microtubule-binding domain of end-binding protein 1 (EB1). J Biol Chem 278:36430–36434. https://doi.org/10.1074/jbc.M305773200
Higuchi T, Watanabe Y, Yamamoto M (2002) Protein kinase A regulates sexual development and gluconeogenesis through phosphorylation of the Zn finger transcriptional activator Rst2p in fission yeast. Mol Cell Biol 22:1–11. https://doi.org/10.1128/MCB.22.1.1-11.2002
Inamura S-I, Tanabe T, Kawamukai M, Matsuo Y (2021) Expression of Mug14 is regulated by the transcription factor Rst2 through the cAMP-dependent protein kinase pathway in Schizosaccharomyces pombe. Curr Genet 67:807–821. https://doi.org/10.1007/s00294-021-01194-z
Izban MG, Luse DS (1992) The RNA polymerase II ternary complex cleaves the nascent transcript in a 3’––5’ direction in the presence of elongation factor SII. Genes Dev 6:1342–1356. https://doi.org/10.1101/gad.6.7.1342
Kawamukai M, Ferguson K, Wigler M, Young D (1991) Genetic and biochemical analysis of the adenylyl cyclase of Schizosaccharomyces pombe. Cell Regul 2:155–164. https://doi.org/10.1091/mbc.2.2.155
Kettenbach AN, Deng L, Wu Y et al (2015) Quantitative phosphoproteomics reveals pathways for coordination of cell growth and division by the conserved fission yeast kinase Pom1. Mol Cell Proteomics 14:1275–1287. https://doi.org/10.1074/mcp.M114.045245
Kettenberger H, Armache KJ, Cramer P (2003) Architecture of the RNA polymerase II-TFIIS complex and implications for mRNA cleavage. Cell 114:347–357. https://doi.org/10.1016/s0092-8674(03)00598-1
Kim B, Nesvizhskii AI, Rani PG et al (2007) The transcription elongation factor TFIIS is a component of RNA polymerase II preinitiation complexes. Proc Natl Acad Sci U A 104:16068–16073. https://doi.org/10.1073/pnas.0704573104
Kim DU, Hayles J, Kim D et al (2010) Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe. Nat Biotechnol 28:617–623. https://doi.org/10.1038/nbt.1628
Klug A (1999) Zinc finger peptides for the regulation of gene expression. J Mol Biol 293:215–218. https://doi.org/10.1006/jmbi.1999.3007
Koike A, Kato T, Sugiura R et al (2012) Genetic screening for regulators of Prz1, a transcriptional factor acting downstream of calcineurin in fission yeast. J Biol Chem 287:19294–19303. https://doi.org/10.1074/jbc.M111.310615
Krawchuk MD, Wahls WP (1999) High-efficiency gene targeting in Schizosaccharomyces pombe using a modular, PCR-based approach with long tracts of flanking homology. Yeast 15:1419–1427. https://doi.org/10.1002/(SICI)1097-0061(19990930)15:13%3c1419::AID-YEA466%3e3.0.CO;2-Q
Lock A, Rutherford K, Harris MA, Wood V (2018) PomBase: The scientific resource for fission yeast. Methods Mol Biol 1757:49–68. https://doi.org/10.1007/978-1-4939-7737-6_4
Maeda T, Watanabe Y, Kunitomo H, Yamamoto M (1994) Cloning of the pka1 gene encoding the catalytic subunit of the cAMP-dependent protein kinase in Schizosaccharomyces pombe. J Biol Chem 269:9632–9637. https://doi.org/10.1016/S0021-9258(17)36928-4
Matsuo Y, Kawamukai M (2017) cAMP-dependent protein kinase involves calcium tolerance through the regulation of Prz1 in Schizosaccharomyces pombe. Biosci Biotechnol Biochem 81:231–241. https://doi.org/10.1080/09168451.2016.1246171
Matsuo Y, Tanaka K, Nakagawa T et al (2004) Genetic analysis of chs1+ and chs2+ encoding chitin synthases from Schizosaccharomyces pombe. Biosci Biotechnol Biochem 68:1489–1499. https://doi.org/10.1271/bbb.68.1489
Matsuo Y, McInnis B, Marcus S (2008) Regulation of the subcellular localization of cyclic AMP-dependent protein kinase in response to physiological stresses and sexual differentiation in the fission yeast Schizosaccharomyces pombe. Eukaryot Cell 7:1450–1459. https://doi.org/10.1128/EC.00168-08
Matsuo Y, Marcus S, Kawamukai M (2022) Synergistic roles of the phospholipase B homolog Plb1 and the cAMP-dependent protein kinase Pka1 in the hypertonic stress response of Schizosaccharomyces pombe. Curr Genet 68:661–674. https://doi.org/10.1007/s00294-022-01253-z
McInnis B, Mitchell J, Marcus S (2010) Phosphorylation of the protein kinase A catalytic subunit is induced by cyclic AMP deficiency and physiological stresses in the fission yeast, Schizosaccharomyces pombe. Biochem Biophys Res Commun 399:665–669. https://doi.org/10.1016/j.bbrc.2010.07.139
Morozumi Y, Shiozaki K (2021) Conserved and divergent mechanisms that control TORC1 in yeasts and mammals. Genes 12:88. https://doi.org/10.3390/genes12010088
Murray JM, Watson AT, Carr AM (2016) Transformation of Schizosaccharomyces pombe: lithium acetate/ dimethyl sulfoxide procedure. Cold Spring Harb Protoc 2016:pdb prot090969. https://doi.org/10.1101/pdb.prot090969
Nakagawa T, Okita AK (2019) Transcriptional silencing of centromere repeats by heterochromatin safeguards chromosome integrity. Curr Genet 65:1089–1098. https://doi.org/10.1007/s00294-019-00975-x
Nishida I, Yokomi K, Hosono K et al (2019) CoQ10 production in Schizosaccharomyces pombe is increased by reduction of glucose levels or deletion of pka1. Appl Microbiol Biotechnol 103:4899–4915. https://doi.org/10.1007/s00253-019-09843-7
Niwa O, Matsumoto T, Yanagida M (1986) Construction of a minichromosome by deletion and its mitotic and meiotic behavior in fission yeast. Mol Gen Genet 203:397–405. https://doi.org/10.1007/Bf00422063
Okita AK, Zafar F, Su J et al (2019) Heterochromatin suppresses gross chromosomal rearrangements at centromeres by repressing Tfs1/TFIIS-dependent transcription. Commun Biol 2:17. https://doi.org/10.1038/s42003-018-0251-z
Petersen J, Russell P (2016) Growth and the environment of Schizosaccharomyces pombe. Cold Spring Harb Protoc 2016:pdb top079764. https://doi.org/10.1101/pdb.top079764
Roux AE, Quissac A, Chartrand P et al (2006) Regulation of chronological aging in Schizosaccharomyces pombe by the protein kinases Pka1 and Sck2. Aging Cell 5:345–357. https://doi.org/10.1111/j.1474-9726.2006.00225.x
Sadeghi L, Prasad P, Ekwall K et al (2015) The Paf1 complex factors Leo1 and Paf1 promote local histone turnover to modulate chromatin states in fission yeast. EMBO Rep 16:1673–1687. https://doi.org/10.15252/embr.201541214
Saitoh S, Mori A, Uehara L et al (2015) Mechanisms of expression and translocation of major fission yeast glucose transporters regulated by CaMKK/phosphatases, nuclear shuttling, and TOR. Mol Biol Cell 26:373–386. https://doi.org/10.1091/mbc.E14-11-1503
Shieh JC, Wilkinson MG, Buck V et al (1997) The Mcs4 response regulator coordinately controls the stress-activated Wak1-Wis1-Sty1 MAP kinase pathway and fission yeast cell cycle. Genes Dev 11:1008–1022. https://doi.org/10.1101/gad.11.8.1008
Shieh J-C, Wilkinson MG, Millar JBA (1998) The Win1 mitotic regulator is a component of the fission yeast stress-activated Sty1 MAPK pathway. Mol Biol Cell 9:311–322. https://doi.org/10.1091/mbc.9.2.311
Shiozaki K, Russell P (1996) Conjugation, meiosis, and the osmotic stress response are regulated by Spc1 kinase through Atf1 transcription factor in fission yeast. Genes Dev 10:2276–2288. https://doi.org/10.1101/gad.10.18.2276
Stiefel J, Wang L, Kelly DA et al (2004) Suppressors of an adenylate cyclase deletion in the fission yeast Schizosaccharomyces pombe. Eukaryot Cell 3:610–619. https://doi.org/10.1128/EC.3.3.610-619.2004
Takenaka K, Tanabe T, Kawamukai M, Matsuo Y (2018) Overexpression of the transcription factor Rst2 in Schizosaccharomyces pombe indicates growth defect, mitotic defects, and microtubule disorder. Biosci Biotechnol Biochem 82:247–257. https://doi.org/10.1080/09168451.2017.1415126
Tanabe T, Yamaga M, Kawamukai M, Matsuo Y (2019) Mal3 is a multi-copy suppressor of the sensitivity to microtubule-depolymerizing drugs and chromosome mis-segregation in a fission yeast pka1 mutant. PloS One 14:e0214803. https://doi.org/10.1371/journal.pone.0214803
Tanabe T, Kawamukai M, Matsuo Y (2020) Glucose limitation and pka1 deletion rescue aberrant mitotic spindle formation induced by Mal3 overexpression in Schizosaccharomyces pombe. Biosci Biotechnol Biochem 84:1667–1680. https://doi.org/10.1080/09168451.2020.1763157
Wilkinson MG, Samuels M, Takeda T et al (1996) The Atf1 transcription factor is a target for the Sty1 stress-activated MAP kinase pathway in fission yeast. Genes Dev 10:2289–2301. https://doi.org/10.1101/gad.10.18.2289
Wu SY, McLeod M (1995) The sak1+ gene of Schizosaccharomyces pombe encodes an RFX family DNA-binding protein that positively regulates cyclic AMP-dependent protein kinase-mediated exit from the mitotic cell cycle. Mol Cell Biol 15:1479–1488. https://doi.org/10.1128/MCB.15.3.1479
Yamagishi Y, Yang CH, Tanno Y, Watanabe Y (2012) MPS1/Mph1 phosphorylates the kinetochore protein KNL1/Spc7 to recruit SAC components. Nat Cell Biol 14:746–752. https://doi.org/10.1038/ncb2515
Yamamoto A, Hiraoka Y (2003) Monopolar spindle attachment of sister chromatids is ensured by two distinct mechanisms at the first meiotic division in fission yeast. EMBO J 22:2284–2296. https://doi.org/10.1093/emboj/cdg222
Acknowledgements
The authors thank all the members of our laboratory for their support and scientific advice. FY15609 (AY260-2A) was provided by the National Bio-Resource Project (NBRP), Japan. We would like to thank Editage (www.editage.com) for English language editing.
Funding
The authors thank the faculty of Life and Environmental Sciences in Shimane University for help in financial support for publication. This work was supported by a JSPS KAKENHI Grant Number JP18K05438 (to YM) and JP19K222831 (to MK).
Author information
Authors and Affiliations
Contributions
KT designed the experiments, performed the experiments, made the yeast strains, and analyzed the data; SN performed the experiments, made the yeast strains, and analyzed the data; YN performed the experiments; MK analyzed the data and provided advice; YM planned the study, designed the experiments, made the plasmids and strains, performed the experiments, and analyzed the data. YM drafted the original manuscript. MK and YM reviewed and edited the original manuscript.
Corresponding author
Ethics declarations
Conflict of interest
The authors declare that they have no conflicts of interest regarding the contents of this article.
Additional information
Publisher's Note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Supplementary Information
Below is the link to the electronic supplementary material.
Rights and permissions
Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.
About this article
Cite this article
Takenaka, K., Nishioka, S., Nishida, Y. et al. Tfs1, transcription elongation factor TFIIS, has an impact on chromosome segregation affected by pka1 deletion in Schizosaccharomyces pombe. Curr Genet 69, 115–125 (2023). https://doi.org/10.1007/s00294-023-01268-0
Received:
Revised:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00294-023-01268-0