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Characterization and cross-species amplification of 33 SNP markers for Liobagrus angullicauda (Teleostei, Siluriformes:Amblycipitidae)

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Abstract

Liobagrus angullicauda is an endemic species to streams along the southeast coast in China. Due to over fishing and habitat destruction, the natural population of L. angullicauda has decreased dramatically in recent years. Insufficient molecular markers have limited the effective conservation and management of this species. In the present study, we reported the isolation and characterization of 33 SNP markers in L. angullicauda. The minor allele frequency ranged from 0.083 to 0.507, and the observed and expected heterozygosities ranged from 0.177 to 0.624 and 0.290 to 0.712, respectively. Polymorphic information content ranged from 0.118 to 0.408. Among these SNPs, only four loci showed significant departures from the Hardy–Weinberg equilibrium (P < 0.05). Cross-amplification was tested in related species Liobagrus nigricauda, Liobagrus marginalus and Liobagrus marginatoides. The novel polymorphic SNPs should be helpful for the future study on genetic management and population conservation for this species.

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Acknowledgements

This study was supported by Laboratory of Hubei University of Science and Technology.

Funding

The research funding was provided by the Xianning First People’s Hospital.

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Author notes

  1. Xiang-Yang Jia and Wei Li: co-first authors.

Authors and Affiliations

  1. Xianning Fist Peopleʹs Hospital, Xianning, 437100, Hubei, People’s Republic of China

    Xiang-Yang Jia, Wei Li, Jun Yan & Ling-Li Xia

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  1. Xiang-Yang Jia
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  2. Wei Li
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  3. Jun Yan
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  4. Ling-Li Xia
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Contributions

XYJ conceived and designed the study, contributed to the collection of the samples and the drafted the manuscript. WL contributed to the analysis and writing. JY participated in the data collection, purification, and management of the samples for sequencing and genotyping. All authors have reviewed and approved the manuscript.

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Correspondence to Ling-Li Xia.

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Jia, XY., Li, W., Yan, J. et al. Characterization and cross-species amplification of 33 SNP markers for Liobagrus angullicauda (Teleostei, Siluriformes:Amblycipitidae). Conservation Genet Resour 16, 85–88 (2024). https://doi.org/10.1007/s12686-023-01328-0

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  • DOI: https://doi.org/10.1007/s12686-023-01328-0

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