Skip to main content
Log in

Segmenting mechanically heterogeneous domains via unsupervised learning

  • Original Paper
  • Published:
Biomechanics and Modeling in Mechanobiology Aims and scope Submit manuscript

Abstract

From biological organs to soft robotics, highly deformable materials are essential components of natural and engineered systems. These highly deformable materials can have heterogeneous material properties, and can experience heterogeneous deformations with or without underlying material heterogeneity. Many recent works have established that computational modeling approaches are well suited for understanding and predicting the consequences of material heterogeneity and for interpreting observed heterogeneous strain fields. In particular, there has been significant work toward developing inverse analysis approaches that can convert observed kinematic quantities (e.g., displacement, strain) to material properties and mechanical state. Despite the success of these approaches, they are not necessarily generalizable and often rely on tight control and knowledge of boundary conditions. Here, we will build on the recent advances (and ubiquity) of machine learning approaches to explore alternative approaches to detect patterns in heterogeneous material properties and mechanical behavior. Specifically, we will explore unsupervised learning approaches to clustering and ensemble clustering to identify heterogeneous regions. Overall, we find that these approaches are effective, yet limited in their abilities. Through this initial exploration (where all data and code are published alongside this manuscript), we set the stage for future studies that more specifically adapt these methods to mechanical data.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6
Fig. 7
Fig. 8
Fig. 9
Fig. 10
Fig. 11

Similar content being viewed by others

Notes

  1. In our published dataset, we provide \(\approx 1500\) tracked fiducial markers obtained from finite element simulations. However, for all of our analysis, we only use 1000 tracked fiducial markers per simulation.

  2. The terms “affinity matrix” and “similarity matrix” are used interchangeably in this literature.

  3. This feature space is also referred to as the “Gram matrix” in the literature.

  4. Random boundary conditions are provided with seed numbers for reproducibility.

References

  • Albocher U, Oberai AA, Barbone PE, Harari I (2009) Adjoint-weighted equation for inverse problems of incompressible plane-stress elasticity. Comput Meth Appl Mech Eng 198(30–32):2412–2420

    Article  Google Scholar 

  • Arthur D, Vassilvitskii S (2007a) K-means++: The advantages of careful seeding. Proceedings of the Eighteenth Annual ACM-SIAM Sympnosium on Discrete Algorithm

  • Arthur D, Vassilvitskii S (2007b) K-means++ the advantages of careful seeding. In Proceedings of the eighteenth annual ACM-SIAM symposium on Discrete algorithms (pp. 1027–1035)

  • Arzani A, Yuan L, Newell P, Wang B (2023) Interpreting and generalizing deep learning in physics-based problems with functional linear models. arXiv preprint arXiv:2307.04569

  • Ateshian GA, Spack KA, Hone JC, Azeloglu EU, Gusella GL (2023) Computational study of biomechanical drivers of renal cystogenesis. Biomechanics and Modeling in Mechanobiology, (pp. 1–15)

  • Babaniyi OA, Oberai AA, Barbone PE (2017) Direct error in constitutive equation formulation for plane stress inverse elasticity problem. Comput Meth Appl Mech Eng 314:3–18

    Article  MathSciNet  Google Scholar 

  • Bächer M, Hepp B, Pece F, Kry PG, Bickel B, Thomaszewski B, Hilliges O (2016) Defsense: Computational design of customized deformable input devices. In Proceedings of the 2016 CHI Conference on Human Factors in Computing Systems (pp. 3806–3816)

  • Barbone PE, Bamber JC (2002) Quantitative elasticity imaging: what can and cannot be inferred from strain images. Phys Med Biol 47(12):2147

    Article  PubMed  Google Scholar 

  • Barbone PE, Oberai AA, Harari I (2007) Adjoint-weighted variational formulation for a direct computational solution of an inverse heat conduction problem. Inverse Probl 23(6):2325

    Article  ADS  MathSciNet  Google Scholar 

  • Barrio R, Varea C, Aragón J, Maini P (1999) A two-dimensional numerical study of spatial pattern formation in interacting turing systems. Bull Math Biol 61(3):483–505

    Article  CAS  PubMed  Google Scholar 

  • Blum KM, Zbinden JC, Ramachandra AB, Lindsey SE, Szafron JM, Reinhardt JW, Heitkemper M, Best CA, Mirhaidari GJ, Chang Y-C et al (2022) Tissue engineered vascular grafts transform into autologous neovessels capable of native function and growth. Commun Medi 2(1):3

    Article  Google Scholar 

  • Caliński T, Harabasz J (1974) A dendrite method for cluster analysis. Commun Statist Theory Meth 3(1):1–27

    Article  MathSciNet  Google Scholar 

  • Calisti M, Picardi G, Laschi C (2017) Fundamentals of soft robot locomotion. J Royal Soc Interf 14(130):20170101

    Article  Google Scholar 

  • Castilho M, Hochleitner G, Wilson W, van Rietbergen B, Dalton PD, Groll J, Malda J, Ito K (2018) Mechanical behavior of a soft hydrogel reinforced with three-dimensional printed microfibre scaffolds. Sci Rep 8(1):1–10

    Article  CAS  Google Scholar 

  • Chen C-T, Gu GX (2021) Learning hidden elasticity with deep neural networks. Proc Nat Acad Sci 118(31):e2102721118

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Chen J, Yang L, Zhang Y, Alber M, Chen DZ (2016) Combining fully convolutional and recurrent neural networks for 3d biomedical image segmentation. Adv Neural Inf Process Syst, 29

  • Cortes C, Vapnik V (1995) Support-vector networks. Machine learning 20:273–297

    Google Scholar 

  • Coyle S, Majidi C, LeDuc P, Hsia KJ (2018) Bio-inspired soft robotics: material selection, actuation, and design. Extreme Mech Lett 22:51–59

    Article  Google Scholar 

  • Culha U, Nurzaman SG, Clemens F, Iida F (2014) Svas3: strain vector aided sensorization of soft structures. Sensors 14(7):12748–12770

    Article  ADS  PubMed  PubMed Central  Google Scholar 

  • Davies DL, Bouldin DW (1979) A cluster separation measure. IEEE transactions on pattern analysis and machine intelligence 2:224–227

    Article  Google Scholar 

  • de Lucio M, Leng Y, Wang H, Ardekani AM, Vlachos PP, Shi G, Gomez H (2023) Computational modeling of the effect of skin pinch and stretch on subcutaneous injection of monoclonal antibodies using autoinjector devices. Biomechanics and Modeling in Mechanobiology, (pp. 1–18)

  • Ferreira BP, Pires FMA, Bessa MA (2023) Crate: A python package to perform fast material simulations. Journal of Open Source Software 8(87):5594

    Article  ADS  Google Scholar 

  • Fränti P, Sieranoja S (2019) How much can k-means be improved by using better initialization and repeats? Pattern Recognition 93:95–112

    Article  ADS  Google Scholar 

  • Garikipati K (2017) Perspectives on the mathematics of biological patterning and morphogenesis. Journal of the Mechanics and Physics of Solids 99:192–210

    Article  ADS  MathSciNet  CAS  Google Scholar 

  • Gemici AA, Ozal ST, Hocaoglu E, Inci E (2020) Relationship between shear wave elastography findings and histologic prognostic factors of invasive breast cancer. Ultrasound Quarterly 36(1):79–83

    Article  PubMed  Google Scholar 

  • Guo Y, Mofrad MR, Tepole AB (2022) On modeling the multiscale mechanobiology of soft tissues: Challenges and progress. Biophysics Reviews 3(3):031303

    Article  Google Scholar 

  • Halvorsen S, Wang R, Zhang Y (2023) Contribution of elastic and collagen fibers to the mechanical behavior of bovine nuchal ligament. Annals of Biomedical Engineering, (pp. 1–12)

  • Haugh MG, Vaughan TJ, Madl CM, Raftery RM, McNamara LM, O’Brien FJ, Heilshorn SC (2018) Investigating the interplay between substrate stiffness and ligand chemistry in directing mesenchymal stem cell differentiation within 3d macro-porous substrates. Biomaterials 171:23–33

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Holzapfel GA, Ogden RW (2009) Constitutive modelling of passive myocardium: a structurally based framework for material characterization. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences 367(1902):3445–3475

    Article  ADS  MathSciNet  Google Scholar 

  • Huang X, Patterson ZJ, Sabelhaus AP, Huang W, Chin K, Ren Z, Jawed MK, Majidi C (2022) Design and closed-loop motion planning of an untethered swimming soft robot using 2d discrete elastic rods simulations. Advanced Intelligent Systems 4(10):2200163

    Article  Google Scholar 

  • Huang X, Sabelhaus AP, Jawed MK, Jin L, Zou J, Chen Y (2022) Materials, design, modeling and control of soft robotic artificial muscles. Frontiers in Robotics and AI 9:1074549

    Article  PubMed  PubMed Central  Google Scholar 

  • Hubert L, Arabie P (1985) Comparing partitions. Journal of Classification

  • Jing R, Anderson ML, Ianus-Valdivia M, Ali AA, Majidi C Sabelhaus AP (2022) Safe balancing control of a soft legged robot. arXiv preprint arXiv:2209.13715

  • Kakaletsis S, Meador WD, Mathur M, Sugerman GP, Jazwiec T, Malinowski M, Lejeune E, Timek TA, Rausch MK (2021) Right ventricular myocardial mechanics: Multi-modal deformation, microstructure, modeling, and comparison to the left ventricle. Acta biomaterialia 123:154–166

    Article  CAS  PubMed  Google Scholar 

  • Kanungo T, Mount DM, Netanyahu NS, Piatko CD, Silverman R, Wu AY (2002) An efficient k-means clustering algorithm: Analysis and implementation. IEEE transactions on pattern analysis and machine intelligence 24(7):881–892

    Article  Google Scholar 

  • Kennedy BF, Wijesinghe P, Sampson DD (2017) The emergence of optical elastography in biomedicine. Nature Photonics 11(4):215–221

    Article  ADS  CAS  Google Scholar 

  • Kobeissi H, Mohammadzadeh S, Lejeune E (2022) Enhancing mechanical metamodels with a generative model-based augmented training dataset. Journal of Biomechanical Engineering

  • Krouskop TA, Wheeler TM, Kallel F, Garra BS, Hall T (1998) Elastic moduli of breast and prostate tissues under compression. Ultrasonic imaging 20(4):260–274

    Article  CAS  PubMed  Google Scholar 

  • Lejeune E (2020) Mechanical mnist: A benchmark dataset for mechanical metamodels. Extreme Mechanics Letters

  • Lejeune E (2021) Geometric stability classification: Datasets, metamodels, and adversarial attacks. Computer-Aided Design

  • Lin C-Y, Mathur M, Malinowski M, Timek TA, Rausch MK (2022) The impact of thickness heterogeneity on soft tissue biomechanics: a novel measurement technique and a demonstration on heart valve tissue. Biomechanics and Modeling in Mechanobiology, (pp. 1–12)

  • Linne MA, Daly S (2019) Data clustering for the high-resolution alignment of microstructure and strain fields. Materials Characterization 158:109984

    Article  CAS  Google Scholar 

  • Liu FT, Ting KM, Zhou, Z-H (2008) Isolation forest. In 2008 eighth ieee international conference on data mining (pp. 413–422).: IEEE

  • Liu Q-X, Doelman A, Rottschäfer V, de Jager M, Herman PM, Rietkerk M, van de Koppel J (2013) Phase separation explains a new class of self-organized spatial patterns in ecological systems. Proceedings of the National Academy of Sciences 110(29):11905–11910

    Article  ADS  MathSciNet  CAS  Google Scholar 

  • Liu Z, Bessa M, Liu WK (2016) Self-consistent clustering analysis: an efficient multi-scale scheme for inelastic heterogeneous materials. Computer Methods in Applied Mechanics and Engineering 306:319–341

    Article  ADS  MathSciNet  Google Scholar 

  • Logg A, Mardal K-A, Wells G (2012) Automated solution of differential equations by the finite element method: The FEniCS book. Springer Science & Business Media

  • Long T, Shende S, Lin C-Y, Vemaganti K (2022) Experiments and hyperelastic modeling of porcine meniscus show heterogeneity at high strains. Biomechanics and Modeling in Mechanobiology 21(6):1641–1658

    Article  PubMed  Google Scholar 

  • Mahutga RR, Barocas VH, Alford PW (2023) The non-affine fiber network solver: A multiscale fiber network material model for finite-element analysis. Journal of the Mechanical Behavior of Biomedical Materials, (pp. 105967)

  • Malandrino A, Jackson AR, Huyghe JM, Noailly J (2015) Poroelastic modeling of the intervertebral disc: A path toward integrated studies of tissue biophysics and organ degeneration. MRS bulletin 40(4):324–332

    Article  ADS  CAS  Google Scholar 

  • Meek KM, Knupp C (2015) Corneal structure and transparency. Progress in retinal and eye research 49:1–16

    Article  PubMed  PubMed Central  Google Scholar 

  • Middendorf JM, Budrow CJ, Ellingson AM, Barocas VH (2023) The lumbar facet capsular ligament becomes more anisotropic and the fibers become stiffer with intervertebral disc and facet joint degeneration. Journal of biomechanical engineering 145(5):051004

    Article  PubMed  Google Scholar 

  • Moffitt H, McPhail GD, Woodman B, Hobbs C, Bates GP (2009) Formation of polyglutamine inclusions in a wide range of non-cns tissues in the hdh q150 knock-in mouse model of huntington’s disease. PloS one 4(11):e8025

    Article  ADS  PubMed  PubMed Central  Google Scholar 

  • Mohammadzadeh S, Lejeune E (2021) Predicting mechanically driven full-field quantities of interest with deep learning-based metamodels. Extreme Mechanics Letters

  • Muir C, Swaminathan B, Fields K, Almansour A, Sevener K, Smith C, Presby M, Kiser J, Pollock T, Daly S (2021) A machine learning framework for damage mechanism identification from acoustic emissions in unidirectional sic/sic composites. npj Computational Materials, 7(1), 146

  • Muir C, Tulshibagwale N, Furst A, Swaminathan B, Almansour A, Sevener K, Presby M, Kiser J, Pollock T, Daly S et al (2023) Quantitative benchmarking of acoustic emission machine learning frameworks for damage mechanism identification. Integrating Materials and Manufacturing Innovation 12(1):70–81

    Article  Google Scholar 

  • Nguyen Q, Lejeune E (2023) Mechanical mnist - unsupervised learning dataset

  • Oberai AA, Gokhale NH, Feijóo GR (2003) Solution of inverse problems in elasticity imaging using the adjoint method. Inverse problems 19(2):297

    Article  ADS  MathSciNet  Google Scholar 

  • Paek J, Ko J (2015) \(k\)-means clustering-based data compression scheme for wireless imaging sensor networks. IEEE Systems Journal 11(4):2652–2662

    Article  ADS  Google Scholar 

  • Palanca M, Tozzi G, Cristofolini L (2016) The use of digital image correlation in the biomechanical area: a review. International biomechanics 3(1):1–21

    Article  Google Scholar 

  • Park Y-L, Chen B-R, Wood RJ (2012) Design and fabrication of soft artificial skin using embedded microchannels and liquid conductors. IEEE Sensors journal 12(8):2711–2718

    Article  ADS  CAS  Google Scholar 

  • Pedregosa F, Varoquaux G, Gramfort A, Michel V, Thirion B, Grisel O, Blondel M, Prettenhofer P, Weiss R, Dubourg V, Vanderplas J, Passos A, Cournapeau D, Brucher M, Perrot M, Duchesnay E (2011) Scikit-learn: Machine learning in Python. Journal of Machine Learning Research 12:2825–2830

    MathSciNet  Google Scholar 

  • Peng GC, Alber M, Buganza Tepole A, Cannon WR, De S, Dura-Bernal S, Garikipati K, Karniadakis G, Lytton WW, Perdikaris P et al (2021) Multiscale modeling meets machine learning: What can we learn? Archives of Computational Methods in Engineering 28:1017–1037

    Article  MathSciNet  PubMed  Google Scholar 

  • Prachasere, P, Lejeune E (2022) Learning mechanically driven emergent behavior with message passing neural networks. Computers & Structures

  • Ray D, Ramaswamy H, Patel DV, Oberai AA (2022) The efficacy and generalizability of conditional gans for posterior inference in physics-based inverse problems. arXiv preprint arXiv:2202.07773

  • Rousseeuw PJ (1987) Silhouettes: a graphical aid to the interpretation and validation of cluster analysis. Journal of computational and applied mathematics 20:53–65

    Article  Google Scholar 

  • Sandrin L, Fourquet B, Hasquenoph J-M, Yon S, Fournier C, Mal F, Christidis C, Ziol M, Poulet B, Kazemi F et al (2003) Transient elastography: a new noninvasive method for assessment of hepatic fibrosis. Ultrasound in medicine & biology 29(12):1705–1713

    Article  Google Scholar 

  • Shi J, Malik J (2000) Normalized cuts and image segmentation. IEEE Transactions on pattern analysis and machine intelligence 22(8):888–905

    Article  Google Scholar 

  • Siadat SM, Zamboulis DE, Thorpe CT, Ruberti JW, Connizzo BK (2021) Tendon extracellular matrix assembly, maintenance and dysregulation throughout life. Progress in Heritable Soft Connective Tissue Diseases, (pp. 45–103)

  • Sigaeva T, Zhang Y (2023) A novel constitutive model considering the role of elastic lamellae’structural heterogeneity in homogenizing transmural stress distribution in arteries. Journal of the Royal Society Interface 20(201):20220837

    Article  PubMed  Google Scholar 

  • Spielberg A, Amini A, Chin L, Matusik W, Rus D (2021) Co-learning of task and sensor placement for soft robotics. IEEE Robotics and Automation Letters 6(2):1208–1215

    Article  Google Scholar 

  • Sree VD, Toaquiza-Tubon JD, Payne J, Solorio L, Tepole AB (2023) Damage and fracture mechanics of porcine subcutaneous tissue under tensile loading. Annals of Biomedical Engineering, (pp. 1–14)

  • Steinley D (1985) Properties of the hubert-arable adjusted rand index. Journal of Classification

  • Strehl A, Ghosh J (2002) Cluster ensembles - a knowledge reuse framework for combining multiple partitions. Journal of Machine Learning Research

  • Sugerman G, Yang J, Rausch M (2023) A speckling technique for dic on ultra-soft, highly hydrated materials. Experimental Mechanics, (pp. 1–6)

  • Sun Y, Myers DR, Nikolov SV, Oshinowo O, Baek J, Bowie SM, Lambert TP, Woods E, Sakurai Y, Lam WA et al (2021) Platelet heterogeneity enhances blood clot volumetric contraction: An example of asynchrono-mechanical amplification. Biomaterials 274:120828

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Tapia J, Knoop E, Mutnỳ M, Otaduy MA, Bächer M (2020) Makesense: Automated sensor design for proprioceptive soft robots. Soft robotics 7(3):332–345

    Article  PubMed  Google Scholar 

  • Tax DM, Duin RP (1999) Support vector domain description. Pattern recognition letters 20(11–13):1191–1199

    Article  ADS  Google Scholar 

  • Teich EG, Cieslak M, Giesbrecht B, Vettel JM, Grafton ST, Satterthwaite TD, Bassett DS (2021) Crystallinity characterization of white matter in the human brain. New Journal of Physics 23(7):073047

    Article  Google Scholar 

  • Toaquiza Tubon JD, Moreno-Flores O, Sree VD, Tepole AB (2022) Anisotropic damage model for collagenous tissues and its application to model fracture and needle insertion mechanics. Biomechanics and Modeling in Mechanobiology 21(6):1–16

    Article  PubMed  Google Scholar 

  • Vapnik V (2006) Estimation of dependences based on empirical data. Springer Science & Business Media

  • Visser VL, Caçoilo A, Rusinek H, Weickenmeier J (2023) Mechanical loading of the ventricular wall as a spatial indicator for periventricular white matter degeneration. Journal of the Mechanical Behavior of Biomedical Materials 143:105921

    Article  PubMed  Google Scholar 

  • Von Luxburg U (2007) A tutorial on spectral clustering. Statistics and computing 17:395–416

    Article  MathSciNet  Google Scholar 

  • Wall V, Zöller G, Brock O (2017) A method for sensorizing soft actuators and its application to the rbo hand 2. In 2017 IEEE International Conference on Robotics and Automation (ICRA) (pp. 4965–4970).: IEEE

  • Wang H, Totaro M, Beccai L (2018) Toward perceptive soft robots: Progress and challenges. Advanced Science 5(9):1800541

    Article  PubMed  PubMed Central  Google Scholar 

  • Weiss D, Long AS, Tellides G, Avril S, Humphrey JD, Bersi MR (2022) Evolving mural defects, dilatation, and biomechanical dysfunction in angiotensin ii-induced thoracic aortopathies. Arteriosclerosis, thrombosis, and vascular biology 42(8):973–986

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Witzenburg CM, Barocas VH (2016) A nonlinear anisotropic inverse method for computational dissection of inhomogeneous planar tissues. Computer methods in biomechanics and biomedical engineering 19(15):1630–1646

    Article  PubMed  PubMed Central  Google Scholar 

  • Witzenburg CM, Dhume RY, Lake SP, Barocas VH (2015) Automatic segmentation of mechanically inhomogeneous tissues based on deformation gradient jump. IEEE transactions on medical imaging 35(1):29–41

    Article  PubMed  PubMed Central  Google Scholar 

  • Ye S, Li B, Li Q, Zhao H-P, Feng X-Q (2019) Deep neural network method for predicting the mechanical properties of composites. Applied Physics Letters, 115(16)

  • You H, Zhang Q, Ross CJ, Lee C-H, Hsu M-C, Yu Y (2022) A physics-guided neural operator learning approach to model biological tissues from digital image correlation measurements. Journal of Biomechanical Engineering 144(12):121012

    Article  PubMed  PubMed Central  Google Scholar 

  • Yuan L, Park HS, Lejeune E (2022) Towards out of distribution generalization for problems in mechanics. Computer Methods in Applied Mechanics and Engineering

  • Zhang W, Jilberto J, Sommer G, Sacks MS, Holzapfel GA, Nordsletten DA (2023) Simulating hyperelasticity and fractional viscoelasticity in the human heart. Computer Methods in Applied Mechanics and Engineering 411:116048

    Article  ADS  MathSciNet  Google Scholar 

Download references

Acknowledgements

We would like to thank the staff of the Boston University Research Computing Services and the OpenBU Institutional Repository (in particular Eleni Castro and Yumi Ohira) for their invaluable assistance with generating and disseminating the “Mechanical MNIST – Unsupervised Learning Dataset.” This work was made possible through start-up funds from the Boston University Department of Mechanical Engineering, the David R. Dalton Career Development Professorship, the Hariri Institute Junior Faculty Fellowship, the Office of Naval Research Award N00014-22-1-2066, and the Office of Naval Research Award N00014-23-1-2450.

Author information

Authors and Affiliations

Authors

Contributions

QN wrote the main manuscript text and prepared all figures. EL edited the main manuscript text and edited all figures.

Corresponding author

Correspondence to Emma Lejeune.

Ethics declarations

Conflict of interest

The authors declare no competing interests.

Additional Information

The Mechanical MNIST—Unsupervised Learning dataset is available through the OpenBU Institutional Repository https://open.bu.edu/handle/2144/46508 under a CC BY-SA 4.0 license (Nguyen and Lejeune 2023). With this dataset, we provide an abstract that describes the general purpose of the dataset, a supplementary document that details dataset structure, code to reproduce the dataset, and a tutorial with comprehensive instructions on utilizing the dataset. The code to reproduce both dataset generation via FEniCS and the clustering pipeline detailed in this paper are available on GitHub https://github.com/quan4444/cluster_project under a MIT License.

Additional information

Publisher's Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Appendices

Appendix A : K-means clustering result for circle inclusion with boundary conditions varying from equibiaxial to biaxial to uniaxial extension

In Fig. 6, 7, and 8, we show the results of applying our clustering pipeline to samples with equibiaxial, uniaxial in x, uniaxial in y, shear, and confined compression boundary conditions. In this Appendix, we provide an additional supplementary result where we vary the x and y displacements such that the boundary conditions fall between uniaxial and equibiaxial extension. In Fig. 10, we show the results of applying k-means clustering to a circle inclusion with these varying boundary conditions. In brief, this result shows that k-means clustering works well for a wide range of different biaxial extensions in the experimental setting. Overall, we observe that equibiaxial extension and near-equibiaxial extension boundary conditions provide the best clustering results (i.e., ARI \(\ge 0.95\)), while boundary conditions closer to uniaxial extension provide worse clustering results (i.e., ARI \(< 0.90\)). Despite the poorer performance in uniaxial extension cases, k-means still identifies the circle inclusion quite well with the lowest \(ARI=0.88\). Finally, as expected, k-means fails to provide any reasonable results when the sample experiences no deformation.

Appendix B: K-means clustering result for circle inclusion with a linearly varying stiffness inclusion with boundary conditions varying from equibiaxial to biaxial to uniaxial extension

In this Appendix, we provide the clustering results from using k-means on a circle inclusion with a linearly varying stiffness. Specifically, the Young’s modulus of the circle inclusion has a value of 1.1 at the edge of the circle, and linearly increases to 10.0 at the center. And, the background of the sample has a Young’s modulus of 1.0. In Fig. 11, we show the results of applying k-means clustering to a circle inclusion with different biaxial extension boundary conditions. These results demonstrate that k-means clustering still performs well even when the inclusion has varying stiffness. However, the clustering results for the varying stiffness inclusion example (i.e., best performing \(\text {ARI} = 0.92\)) are slightly worse than that of single Young’s modulus inclusion (i.e., best performing \(\text {ARI} = 0.96\), Appendix 1). Despite the slightly worse performance, k-means still identifies the inclusions with good results (i.e., the lowest \(ARI=0.87\) excluding the no deformation case).

Rights and permissions

Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Nguyen, Q., Lejeune, E. Segmenting mechanically heterogeneous domains via unsupervised learning. Biomech Model Mechanobiol 23, 349–372 (2024). https://doi.org/10.1007/s10237-023-01779-2

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10237-023-01779-2

Keywords

Navigation