Abstract
The aim of this research is to study the distribution, species diversity, and genetic variability of rickettsiae in Dermacentor spp. ticks from Western Siberia and Northern Kazakhstan. Thus, samples from 571 Dermacentor ticks (406 individuals of Dermacentor reticulatus, 136 Dermacentor nuttalli, 21 Dermacentor marginatus, and 8 Dermacentor silvarum) have been examined for the presence of Rickettsia spp. DNA using nested PCR. The rickettsial species have been determined by species-specific PCR and/or sequencing of gltA gene fragments. For a number of R. raoultii samples, the sequences of the ompA (3266 bp) and ompB (4852 bp) gene fragments have been additionally determined. The examined ticks carry DNA of four Rickettsia species and a new genotype Rickettsia spp. Kos-97-Dr, which cannot be assigned to any known species. All tick species are most commonly infected with R. raoultii; the infection rate varies from 47.0 to 86.8%. Rickettsia sibirica DNA has been found in 16.1–45.7% of D. nuttalli from three sites in the Republic of Altai. DNAs of Rickettsia aeschlimannii, Rickettsia aeschlimannii-like, “Candidatus Rickettsia tarasevichiae,” and a new genotype Rickettsia sp. Kos-97-Dr have been found sporadically in D. reticulatus and D. marginatus. Based on analysis of the gltA gene fragment, seven haplotypes of R. raoultii have been identified; four of them correspond to previously described genotypes. The analysis of long fragments of the ompA and ompB genes of R. raoultii samples revealed the presence of three genetic groups corresponding to different genotypes for the gltA gene. Thus, Dermacentor spp. carry both typical and atypical species of Rickettsia spp. The existence of natural foci of Siberian tick typhus in the Republic of Altai has been demonstrated. Based on the analysis of the variable surface protein genes and conserved gltA gene, the existence of three genetic groups of R. raoultii has been shown.
REFERENCES
Merhej, V., Angelakis, E., Socolovcshi, C., and Raoult, D., Genotyping, evolution and epidemiological findings of Rickettsia species, Infect., Genet. Evol., 2014, vol. 25, pp. 122–137. https://doi.org/10.1016/j.meegid.2014.03.014
Igolkina, Y., Nikitin, A., Verzhutskaya, Y., Gordeyko, N., Tikunov, A., Epikhina, T., et al., Multilocus genetic analysis indicates taxonomic status of “Candidatus Rickettsia mendelii” as a separate basal group, Ticks Tick Borne Dis., 2022, vol. 14, no. 2, p. 102104. https://doi.org/10.1016/j.ttbdis.2022.102104
List of Prokaryotic Names with Standing in Nomenclature—Genus Rickettsia. Accessed February 25, 2023. https://lpsn.dsmz.de/genus/rickettsia.
Tarasevich, I.V., Rickettsial diseases: Current state of the problem, Klin. Mikrobiol. Antimikrobn. Khimioter., 2005, vol. 7, no. 2, pp. 119–129.
Parola, P., Paddock, C., Socolovschi, C., Labruna, M.B., Mediannikov, O., Kernif, T., et al., Update on tick-borne rickettsioses around the world: A geographic approach, Clin. Microbiol. Rev., 2013, vol. 26, no. 4, pp. 657–702. https://doi.org/10.1128/cmr.00104-13
Rudakov, N.V., Rikketsii i rikketsiozy. Rukovodstvo dlya vrachei (Rickettsia and Rickettsiosis. Guide for Doctors), Omsk: Omskii Nauchnyi Vestnik, 2016.
Granitov, V., Shpynov, S., Beshlebova, O., Arsenjeva, I., Dedkov, V., Safonova, M., et al., New evidence on tick-borne rickettsioses in the Altai region of Russia using primary lesions, serum and blood clots of molecular and serological study, Microbes Infect., 2015, vol. 17, nos. 11–12, pp. 862–865. https://doi.org/10.1016/j.micinf.2015.08.011
Shpynov, S., Fournier, P.-E., Rudakov, N., Samoilenko, I., Reshetnikova, T., Yastrebov, V., et al., Molecular identification of a collection of spotted fever group rickettsiae obtained from patients and ticks from Russia, Am. J. Trop. Med. Hyg., 2006, vol. 74, no. 3, pp. 440–443. https://doi.org/10.4269/ajtmh.2006.74.440
Shpynov, S., Fournier, P.-E., Rudakov, N., Tarasevich, I., and Raoult, D., Detection of members of the genera Rickettsia, Anaplasma and Ehrlichia in ticks collected in the Asiatic part of Russia, Ann. N. Y. Acad. Sci., 2006, vol. 1078, pp. 378–383. https://doi.org/10.1196/annals.1374.075
Shpynov, S., Fournier, P.-E., Rudakov, N., Arseneva, I., Granitov, M., Tarasevich, I., and Raoult, D., Tick-borne rickettsiosis in the Altay region of Russia, Clin. Microbiol. Infect., 2009, vol. 15, no. 2, pp. 313–314. https://doi.org/10.1111/j.1469-0691.2008.02255.x
Igolkina, Y., Rar, V., Vysochina, N., Ivanov, L., Tikunov, A., Pukhovskaya, N., et al., Genetic variability of Rickettsia spp. in Dermacentor and Haemaphysalis ticks from the Russian Far East, Ticks Tick Borne Dis., 2018, vol. 9, no. 6, pp. 1594–1603. https://doi.org/10.1016/j.ttbdis.2018.07.015
Rar, V., Livanova, N., Tkachev, S., Kaverina, G., Tikunov, A., Sabitova, Y., et al., Detection and genetic characterization of a wide range of infectious agents in Ixodes pavlovskyi ticks in Western Siberia, Russia, Parasites Vectors, 2017, vol. 10, no. 1, p. 258. https://doi.org/10.1186/s13071-017-2186-5
Yakovchitc, N.V., Bondarenko, E.I., Adelshin, R.V., Melnikova, O.V., Vershinin, E.A., Morozov, I.M., et al., Identification of DNA pathogens of tick-borne rickettsiosis in ticks in the Irkutsk region, Epidemiol. Vaktsinoprofil., 2015, vol. 6, no. 85, pp. 43–46.
Igolkina, Y., Krasnova, E., Rar, V., Savelieva, M., Epikhina, T., Tikunov, A., et al., Detection of causative agents of tick-borne rickettsioses in Western Siberia, Russia: Identification of Rickettsia raoultii and Rickettsia sibirica DNA in clinical samples, Clin. Microbiol. Infect., 2018, vol. 24, no. 2, p. 199. https://doi.org/10.1016/j.cmi.2017.06.003
Igolkina, Y., Rar, V., Krasnova, E., Filimonova, E., Tikunov, A., Epikhina, T., and Tikunova, N., Occurrence and clinical manifestations of tick-borne rickettsioses in Western Siberia: First Russian cases of Rickettsia aeschlimannii and Rickettsia slovaca infections, Ticks Tick Borne Dis., 2022, vol. 13, no. 3, p. 101927. https://doi.org/10.1016/j.ttbdis.2022.101927
Rudakov, N., Samoylenko, I., Shtrek, S., Igolkina, Y., Rar, V., Zhirakovskaia, E., et al., A fatal case of tick-borne rickettsiosis caused by mixed Rickettsia sibirica subsp. sibirica and “Candidatus Rickettsia tarasevichiae” infection in Russia, Ticks Tick Borne Dis., 2019, vol. 10, no. 6, p. 101278. https://doi.org/10.1016/j.ttbdis.2019.101278
Kartashov, M.Yu., Mikryukova, T.P., Krivosheina, E.I., Kuznetsov, A.I., Romanenko, V.N., Miskvitina, N.S., et al., Genotyping of pathogens of tick-borne infections in Dermacentor reticulatus ticks collected in urban biotopes of Tomsk, Parasitology, 2019, vol. 53, no. 5, pp. 355–369. https://doi.org/10.1134/S0031184719050016
Rydkina, E., Roux, V., Rudakov, N., Gafarova, M., Tarasevich, I., and Raoult, D., New Rickettsiae in ticks collected in territories of the former Soviet Union, Emerging Infect. Dis., 1999, vol. 5, no. 6, pp. 811–814. https://doi.org/10.3201/eid0506.990612
Mediannikov, O., Matsumoto, K., Samoylenko, I., Drancourt, M., Roux, V., Rydkina, E., et al., Rickettsia raoultii sp. nov., a spotted fever group rickettsia associated with Dermacentor ticks in Europe and Russia, Int. J. Syst. Evol. Microbiol., 2008, vol. 58, no. 7, pp. 1635–1639.
Dmitrovskii, A.M., Egemberdieva, R.A., Eralieva, L.T., Turebekov, N.A., Shapieva, Zh.Zh., Neupokoeva, A.S., et al., Modern problems of epidemiological surveillance for rickettsiosis in Kazakhstan, Vestn. KazNMU, 2019, vol. 3, pp. 54–57.
Turebekov, N., Abdiyeva, K., Yegenberdiyeva, R., Dmitrovsky, A., Yeraliyeva, L., Shapiyeva, Z., et al., Prevalence of Rickettsia species in ticks including identification of unknown species in two regions in Kazakhstan, Parasites Vectors, 2019, vol. 12, no. 1, p. 197. https://doi.org/10.1186/s13071-019-3440-9
Hay, J., Yeh, K.B., Dasgupta, D., Shapieva, Z., Omasheva, G., Deryabin, P., et al., Biosurveillance in Central Asia: Successes and challenges of tick-borne disease research in Kazakhstan and Kyrgyzstan, Front. Public Health, 2016, vol. 4, p. 4. https://doi.org/10.3389/fpubh.2016.00004
Shpynov, S., Parola, P., Rudakov, N., Samoilenko, I., Tankibaev, M., Tarasevich, I., and Raoult, D., Detection and identification of spotted fever group rickettsiae in Dermacentor ticks from Russia and central Kazakhstan, Eur. J. Clin. Microbiol. Infect. Dis., 2001, vol. 20, no. 12, pp. 903–905. https://doi.org/10.1007/s10096-001-0638-4
Shpynov, S., Fournier, P.-E., Rudakov, N., Tankibaev, M., Tarasevich, I., and Raoult, D., Detection of a Rickettsia closely related to Rickettsia aeschlimannii, Rickettsia heilongjiangensis, Rickettsia sp. strain RpA4, and Ehrlichia muris in ticks collected in Russia and Kazakhstan, J. Clin. Microbiol., 2004, vol. 42, no. 5, pp. 2221–2223. https://doi.org/10.1128/JCM.42.5.2221-2223.2004
Yakimenko, V.V., Mal’kova, M.G., and Shpynov, S.N., Iksodovye kleshchi Zapadnoi Sibiri. Fauna, ekologiya, osnpvnye metody issledovaniya (Ixodid Ticks of Western Siberia. Fauna, Ecology, Basic Research Methods), Omsk: Omsk: Omskii Nauchnyi Vestnik, 2013.
Filippova, N.A., Iksodovye kleshchi podsemeistva Amblyomminae. Fauna Rossii i sopredel’nykh stran. Paukoobraznye (Ixodid Ticks of the Amblyomminae Subfamily. Fauna of Russia and Neighboring Countries. Arachnids), St. Petersburg: Nauka, 1997.
Fournier, P.-E., Roux, V., and Raoult, D., Phylogenetic analysis of spotted fever group rickettsiae by study of the outer surface protein rOmpA, Int. J. Syst. Bacteriol., 1998, vol. 48, no. 3, pp. 839–849. https://doi.org/10.1099/00207713-48-3-839
Igolkina, Y., Rar, V., Yakimenko, V., Tikunov, A., and Tikunova, N., “Candidatus Rickettsia uralica” and “Candidatus Rickettsia thierseensis” are genetic variants of one species, Ticks Tick Borne Dis., 2022, vol. 13, no. 3, p. 101933. https://doi.org/10.1016/j.ttbdis.2022.101933
Doklad “O sostoyanii sanitarno-epidemiologicheskogo blagopoluchiya naseleniya v Respublike Altai v 2022 godu” (Report “On the State of Sanitary and Epidemiological Well-Being of the Population in the Altai Republic in 2022”), Gorno-Altaisk: Department of Federal Service for Supervision of Consumer Rights Protection and Human Welfare in the Altai Republic, 2022.
Gosudarstvennyi doklad “O sostoyanii sanitarno-epidemiologicheskogo blagopoluchiya naseleniya v Novosibirskoi oblasti v 2022 godu” (State Report “On the State of Sanitary and Epidemiological Well-Being of the Population in the Novosibirsk Region in 2022”), Novosibirsk, 2022.
Funding
The study was supported by a state order to the Institute of Chemical Biology and Fundamental Medicine of the Siberian Branch of the Russian Academy of Sciences , no. 121031300043-8.
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Yakubovskij, V.I., Igolkina, Y.P., Tikunov, A.Y. et al. Genetic Diversity of Rickettsiae in Dermacentor spp. Ticks on the Territory of Western Siberia and Northern Kazakhstan. Mol. Genet. Microbiol. Virol. 38, 158–167 (2023). https://doi.org/10.3103/S0891416823030102
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DOI: https://doi.org/10.3103/S0891416823030102