Skip to main content
Log in

The Complete Mitochondrial Genome of the Cavity-Nesting Honeybee, Apis cerana abansis (Insecta: Hymenoptera: Apidae)

  • Published:
Cytology and Genetics Aims and scope Submit manuscript

Abstract

Apis cerana abansis is a unique ecological type of the Asian bees, Apis cerana, distributed mainly over China’s western Sichuan plateau. We used Illumina sequencing to obtain the complete mitochondrial genome of A. c. abansis and determined the phylogenetic relationships between A. c. abansis and other Apis cerana ecotypes. The mitogenome of A. c. abansis contains 15 694 bps and includes 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes and 1 A+T-rich control region. All protein-coding genes are initiated by ATT or ATG codons and terminated by the typical stop codons, TAA or TAG, but the start codon of the ATP8 gene (one of the 13 protein-coding genes) is ATC. The ML phylogenetic tree based on the 13 protein-coding genes showed that A. c. abansis formed a sister group with the Yun-Gui Plateau Chinese bee and the Central China Chinese bee. This study provides a scientific basis for the protection and breeding of A. c. abansis.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1.
Fig. 2.

Similar content being viewed by others

REFERENCES

  1. Alburaki M., Moulin S., Legout H. et al., Mitochondrial structure of Eastern honeybee populations from Syria, Lebanon and Iraq, Apidologie, 2011, vol. 42, pp. 628–641. https://doi.org/10.1007/s13592-011-0062-4

    Article  CAS  Google Scholar 

  2. Arias, M.C. and Sheppard, W.S., Phylogenetic relationships of honeybees (Hymenoptera: Apinae: Apini) inferred from nuclear and mitochondrial DNA sequence data, Mol. Phylogenet. Evol., 2005, vol. 37, no. 1, pp. 25–35. https://doi.org/10.1016/j.ympev.2005.02.017

    Article  CAS  PubMed  Google Scholar 

  3. Bertrand, B., Alburaki, M., Legout, H., et al., MtDNA COI-COII marker and drone congregation area: An efficient method to establish and monitor honeybee (Apis mellifera L.) conservation centres, Mol. Ecol. Resour., 2015, vol. 15, pp. 673–683. https://doi.org/10.1111/1755-0998.12339

    Article  CAS  PubMed  Google Scholar 

  4. Chen, C., Liu, Z.G., Luo, Y.X., Xu, Z., Wang, S.H., Zhang, X.W., Dai, R.G., Gao, J.L., Chen, X., Guo, H.K., et al., Managed honeybee colony losses of the Eastern honeybee (Apis cerana) in China (2011–2014), Apidologie, 2017, vol. 48, no. 5, pp. 692–702. https://doi.org/10.3390/insects12100891

    Article  CAS  Google Scholar 

  5. Cherevatov, O.V., Panchuk, I.I., Kerek, S.S., and Volkov, R.A., Molecular diversity of the CoI–CoII spacer region in the mitochondrial genome and the origin of the Carpathian bee, Cytol. Genet., 2019, vol. 53, no. 4, pp. 276–281. https://doi.org/10.3103/10.3103/s0095452719040030

    Article  Google Scholar 

  6. Franck, P., Garnery, L., and Loiseau, B.P., Genetic diversity of the honeybee in Africa: microsa -tellite and mitochondrial data, Heredity, 2001, vol. 86, pp. 420–430. https://doi.org/10.1007/978-94-007-6928-1

    Article  CAS  PubMed  Google Scholar 

  7. Ge, F.C., Shi, W., Luo, Y.X., Yan, Z.L., and Xue, Y.B., Animal Genetic Resources in China (Bee), Beijing: China Agric. Press, 2011.

    Google Scholar 

  8. He, B., Su, T., Niu, Z., Zhou, Z., Gu, Z., and Huang, D., Characterization of mitochondrial genomes of three Andrena bees (Apoidea: Andrenidae) and insights into the phylogenetics, Int. J. Biol. Macromol., 2019, vol. 127, pp. 118–125. https://doi.org/10.1016/j.ijbiomac.2019.01.036

    Article  CAS  PubMed  Google Scholar 

  9. Hepburn, H.R., Smith, D.R., Radloff, S.E. and Otis, G.W., Infraspecific categories of Apis cerana: morphometric, allozymal and mtDNA diversity, Apidologie, 2001, vol. 32, no. 1, pp. 3–23. https://doi.org/10.1051/apido:2001108

    Article  CAS  Google Scholar 

  10. Hong-Wei, T., Guo-Hua, L., Xia, D., Rui-Qing, L., Hui-Qun, S., Si-Yang, H., Zi-Guo, Y., Guang-Hui, Z., Xing-Quan, Z., and Guy, S., The complete mitochondrial genome of the asiatic cavity-nesting honeybee Apis cerana (Hymenoptera: Apidae), PloS One, 2011, vol. 6, no. 8, p. e23008. https://doi.org/10.1371/journal.pone.0023008

    Article  CAS  Google Scholar 

  11. Ilyasov, R.A., Han, G.Y., Lee, M.L., Kim, K.W., Proshchalykin, M.Y., Lelej, A.S., Takahashi, J.I., and Kwon, H.W., Phylogenetic relationships of Russian Far-East Apis cerana with other North Asian Populations., J. Apicult. Sci., 2019, vol. 63, no. 2. https://doi.org/10.2478/JAS-2019-0024

  12. Jia, Y., Qiu, G., Cao, C., Wang, X., Jiang, L., Zhang, T., Geng, Z., and Jin, S., Mitochondrial genome and phylogenetic analysis of Chaohu duck, Gene, 2023, vol. 851, p. 147018. https://doi.org/10.1016/j.gene.2022.147018

    Article  CAS  PubMed  Google Scholar 

  13. Katoh, K. and Standley, D.M., MAFFT multiple sequence alignment software version 7: improvements in performance and usability, Mol. Biol. Evol., 2013, vol. 30, pp. 772–780. https://doi.org/10.1093/molbev/mst010

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  14. Lan, L., Shi, P., Song, H., Tang, X., Zhou, J., Yang, J., Yang, M., and Xu, J., De novo genome assembly of Chinese Plateau honeybee unravels intraspecies genetic diversity in the Eastern Honeybee, Apis cerana, Insects, 2021, vol. 12, no. 10. https://doi.org/10.3390/insects12100891

  15. Librado Rozas., DnaSP v5: a software for comprehensive analysis of DNA polymorphism data, Bioinformatics (Oxford), 2009, vol. 25, no. 11, pp. 1451–1452. https://doi.org/10.1093/bioinformatics/btp187

    Article  CAS  PubMed  Google Scholar 

  16. Liu, X.W., Chesters, D., Dai, Q.Y., et al., Integrative profiling of bee communities from habitats of Tropical Southern Yunnan (China), Sci. Rep., 2017, no. 7, p. 5336. https://doi.org/10.1038/s41598-017-05262-8

  17. Metlitska, O.I., Polishchuk, V.P., and Taran, S.I., The use of comparative an molecular-genetic evaluation under study of strain genuineness of Ukrainian bees, Anim. Biol., 2010, vol. 12, no. 1, pp. 254–259.

    Google Scholar 

  18. Okuyama, H., Wakamiya, T., Fujiwara, A., Washitani, I., and Takahashi, J.-I., Complete mitochondrial genome of the honeybee Apis cerana native to two remote islands in Japan, Conserv. Genet. Resour., 2017. https://doi.org/10.1007/s12686-017-0721-5

  19. Pentek-Zakar, E., Oleksa, A., Borowik, T., and Kusza, S., Population structure of honey bees in the Carpathian Basin (Hungary) confirms introgression from surrounding subspecies, Ecol. Evol., 2015, vol. 5, no. 23, pp. 5456–5467. https://doi.org/10.1002/ece3.1781

    Article  PubMed  PubMed Central  Google Scholar 

  20. Pereira, A., Albano, M., Alves, F., Andrade, B., and Júnior, A., Influence of apitoxin and melittin from Apis mellifera bee on Staphylococcus aureus strains, Microb. Pathog., 2020, vol. 141, p. 104011. https://doi.org/10.1016/j.micpath.2020.104011

    Article  CAS  Google Scholar 

  21. Rogers, S.O. and Bendich, A.J., Extraction of DNA from milligram amounts of fresh, herbarium and mummified plant tissues, Plant Mol. Biol., 1985, vol. 5, no. 2, pp. 69–76. http://doi.org/2010.1007/bf00020088

    Article  CAS  PubMed  Google Scholar 

  22. Ruttner, F., Biogeography and Taxonomy of Honey Bees, Berlin: Springer-Verlag, 1988.

    Book  Google Scholar 

  23. Tan, K., Qu, Y., Wang, Z., et al., Haplotype diversity and genetic similarity among populations of the Eastern honey bee from Himalaya-Southwest China and Nepal (Hymenoptera: Apidae), Apidologie, 2016, vol. 47, pp. 197–205. https://doi.org/10.1007/s13592-015-0390-x

    Article  Google Scholar 

  24. Teacher, A.G., André, C., Merilä, J., et al., Whole mitochondrial genome scan for population structure and selection in the Atlantic herring, BMC Evol. Biol., 2012, vol. 12, p. 248 https://doi.org/10.1186/1471-2148-12-248

    Article  PubMed  PubMed Central  Google Scholar 

  25. Theisen-Jones, H. and Bienefeld, K., The Asian honeybee (Apis cerana) is significantly in decline, Bee World, 2017, vol. 93, no. 4, pp. 90–97.

    Article  Google Scholar 

  26. Thi, H.D., Olga, C., Arndt, Vh., Quang, M.B., and Sy, V.L., UFBoot2: improving the ultrafast bootstrap approximation, Mol. Biol. Evol., 2017, vol. 35, p. 518. https://doi.org/10.1093/molbev/msx281

    Article  CAS  Google Scholar 

  27. Wang, S., Genetic diversity of Apis cerana abanisis and high-yield beekeeping technology development and utilization, Msc Thesis, Ya’an: Sichuan Agricultural Univ., 2018.

  28. Xu, D., Sun, M., Gao, Z., Zhou, Y., Wang, Q., and Chen, L., Comparison and phylogenetic analysis of mitochondrial genomes of Talpidae animals, Animals, 2023, vol. 13, p. 186. https://doi.org/10.3390/ani13020186

    Article  PubMed  PubMed Central  Google Scholar 

  29. Zhao, W., Tan, K., Zhou, D., et al., Phylogeographic analysis ofApis cerana populations on Hainan Island and southern mainland China, based on mitochondrial DNA sequences, Apidologie, 2014, vol. 45, pp. 21–33. https://doi.org/10.1007/s13592-013-0223-8

    Article  Google Scholar 

Download references

Funding

This work was sponsored by grants from Sichuan Crops and Animals Breeding Special Project in the 14th Five-Year Plan (no. 2021YFYZ0004).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Jiandong Yang.

Ethics declarations

ETHICS APPROVAL AND CONSENT TO PARTICIPATE

All applicable international, national, and/or institutional guidelines for the care and use of animals were followed. No approval of research ethics committees was required to accomplish the goals of this study because experimental work was conducted with an unregulated invertebrate species.

CONFLICT OF INTEREST

The authors of this work declare that they have no conflicts of interest.

Additional information

Publisher’s Note.

Allerton Press remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Supplementary Information

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Xu, L., Yang, J. & Lai, K. The Complete Mitochondrial Genome of the Cavity-Nesting Honeybee, Apis cerana abansis (Insecta: Hymenoptera: Apidae). Cytol. Genet. 58, 136–141 (2024). https://doi.org/10.3103/S0095452724020117

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.3103/S0095452724020117

Navigation