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Jun Chen, Shengbao Suo, Patrick. P.L. Tam, Jing-Dong J. Han, Guangdun Peng*, Naihe Jing*. Using Geo-seq to undertake Low-input RNA-sequencing analysis of cell samples at defined geographical locations to enable mapping of the in situ position of single cells. Nature Protocol 2017; 12(3), 547-565.
Xiong-jun Wang, Yunbo Qiao, Minzhe M. Xiao, Lingbo Wang, Jun Chen, Wenjian Lv, Li Xu, Yan Li, Yumei Wang, Ming-dian Tan, Chao Huang, Jinsong Li, Ting C. Zhao, Zhaoyuan Hou*, Naihe Jing*, Y. Eugene Chin*. Opposing Roles of Acetylation and Phosphorylation in LIFR-Dependent Self-Renewal Growth Signaling in Mouse Embryonic Stem Cells. Cell Reports 2017; 18: 933–946.
Lu Song, Jun Chen, Guangdun Peng, Ke Tang, NaiheJing*. Dynamic Heterogeneity of Brachyury in Mouse Epiblast Stem Cells Mediates Distinct Respond to Extrinsic BMP Signaling. J. Biol. Chem. 2016; 291(29):15212-25.
Guangdun Peng, Shengbao Suo, Jun Chen, Weiyang Chen, Chang Liu, Fang Yu, Ran Wang, Shirui Chen, Na Sun, Guizhong Cui, Lu Song, Patrick P. L. Tam, Jing-Dong Jackie Han*, Naihe Jing*. Spatial Transcriptome for the Molecular Annotation of Lineage Fates and Cell Identity in Mid-Gastrula Mouse Embryo. Developmental Cell 2016; 36 (6), 681-697.
Yunbo Qiao, Xianfa Yang, Naihe Jing*. Epigenetic regulation of early neural fate commitment. Cell. Mol. Life Sci. 2016, 73(7):1399-1411.
Yunbo Qiao, Xianfa Yang, Naihe Jing*. Human neural development and human embryonic stem cell neural differentiation. Stem Cells: Basics and Clinical Translation (R.C. Zhao ed.) 2015, 1:189-199.
Lu Song, Na Sun, Guangdun Peng, Jun Chen, Jing-Dong Jackie Han, Naihe Jing*. Genome-wide ChIP-seq and RNA-seq analyses of Pou3f1 during mouse pluripotent stem cell neural fate commitment. Genomics Data 2015, 5:375-377.
Pingyu Liu, Xiaoyang Dou, Guangdun Peng, Jing-Dong Jackie Han, Naihe Jing*. Genome-wide analysis of histone acetylation dynamics during mouse embryonic stem cell neural differentiation. Genomics Data 2015, 5:15-16.
Chunmei Yue, Naihe Jing*. The promise of stem cells in the therapy of Alzheimer’s disease. Translational Neurodegeneration 2015, 4:8-12.
Ke Tang*, Guangdun Peng, Yunbo Qiao, Lu Song, Naihe Jing*. The Intrinsic Regulations in Neural Fate Commitment. Develop Growth Differ 2015, 57:109-120.
Wanqu Zhu, Xiao Yao, Yan Liang, Dan Liang, Lu Song, Naihe Jing, Jinsong Li and Gang Wang*. Mediator Med23 deficiency enhances neural differentiation of murine embryonic stem cells through modulating BMP signaling. Development 2015, 142:465-476.
Wei Yue, Yuanyuan Li, Ting Zhang, Man Jiang, Yun Qian, Min Zhang, Nengyin Sheng, Su Feng, Ke Tang, Xiang Yu, Yousheng Shu, Chunmei Yue* and Naihe Jing*. ESC-Derived Basal Forebrain Cholinergic Neurons Ameliorate the Cognitive Symptoms Associated with Alzheimer's Disease in Mouse Models. Stem Cell Reports 2015, 5(5):776-90.
Yunbo Qiao, Xiongjun Wang, Ran Wang, Yuanyuan Li, Fang Yu, Xianfa Yang, Lu Song,Guoliang Xu, Y Eugene Chin & Naihe Jing*. AF9 promotes hESC neural differentiation through recruiting TET2 to neurodevelopmental gene loci for methylcytosine hydroxylation. Cell Discovery 2015, 1:15017.
Lingyu Li, Lu Song, Chang Liu, Jun Chen, Guangdun Peng, Ran Wang, Pingyu Liu, Ke Tang, Janet Rossant, and Naihe Jing*. Ectodermal progenitors derived from epiblast stem cells by inhibition of Nodal signaling. J Mol Cell Biol 2015, 7(5):455-65.
Pingyu Liu, Xiaoyang Dou, Chang Liu, Lingbo Wang, Can Xing, Guangdun Peng, Jun Chen, Fang Yu, Yunbo Qiao, Lu Song, Yuxuan Wu, Chunmei Yue, Jinsong Li, Jing-Dong J. Han, Ke Tang, Naihe Jing*. Histone deacetylation promotes mouse neural induction by restricting Nodal-dependent mesendoderm fate. Nature Communications 2015, 6:6830.
Fangzhi Tan, Cheng Qian, Ke Tang, Saber Mohamed Abd-Allah and Naihe Jing*. Inhibition of TGF-β Signaling can Substitute for Oct4 in Reprogramming and Maintain Pluripotency. J Biol Chem 2015, 290(7):4500-4511.
Yunbo Qiao, Ran Wang, Xianfa Yang, Ke Tang and Naihe Jing*. Dual Roles of Histone H3 Lysine 9 Acetylation in Human Embryonic Stem Cell Pluripotency and Neural Differentiation. J Biol Chem 2015, 290(4):2508-2520.
Qingqing Zhu, Lu Song, Guangdun Peng, Na Sun, Jun Chen, Ting Zhang, Nengyin Sheng, Wei Tang, Cheng Qian, Yunbo Qiao, Ke Tang, Jing-Dong Jackie Han, Jinsong Li, Naihe Jing*. The transcription factor Pou3f1 promotes neural fate commitment via activation of neural lineage genes and inhibition of external signaling pathways. Elife 2014, 3:e02224.
Xingxing Xu, Yonghui Tao, Xing Fu,Tao Yu, Yuanyuan Li, Kan Chen, Xiaoyan Ding, Kangcheng Ruan, Naihe Jing*, Ronggui Hu*. ZIP-seq: genome-wide mapping of trinucleotide repeats at single-base resolution. Journal of Molecular Cell Biology 2014, 6: 93–96
Lingyu Li, Chang Liu, Steffen Biechele, Qingqing Zhu, Lu Song, Fredrik Lanner, Naihe Jing and Janet Rossant*. Location of transient ectodermal progenitor potential in mouse development. Development 2013, 140:4533-4543.
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