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(1)Ding C, Butler G, Development of a gene knockout system in Candida parapsilosis reveals a conserved role for BCR1 in biofilm formation. Eukaryot Cell, 6, 1310-1319, 2007.
(2)Rossignol T*, Ding C*, Guida A, d’Enfert C, Higgins DG, Butler G*, Correlation between biofilm formation and hypoxic response in Candida parapsilosis. Eukaryot Cell, 4, 550-559, 2009. (co-first)
(3)Holcombe LJ, McAlester G, Munro CA, Enjalbert B, Brown AJP, Gow NA, Ding C, Butler G, Gara F, Morrissey JP, Pseudomonas aeruginosa secreted factors impair biofilm development in Candida albicans. Microbiology, 156(5), 1476-1486, 2010.
(4)Guida A, Lindstadt C, Maguire SL, Ding C, Higgins DG, Corton NJ, Berriman M, Butler G, Using RNA-seq to determine the transcriptional landscape and the hypoxic response of the pathogenic yeast Candida parapsilosis. BMC Genomic, 12, 628, 2011.
(5)Samanovic MI*, Ding C*, Thiele DJ, Darwin H, Copper in microbial pathogenesis: Meddling with the metal. Cell Host & Microbe, 11(2), 106-115, 2011. (co-first)
(6)Ding C, Yin J, Tovar E, Fitzpatrick DA, Higgins DG, Thiele DJ, The copper regulon of the human fungal pathogen Cryptococcus neoformans H99. Molecular Microbiology, 81(6), 1560-1576, 2011.
(7)Ding C,Vidanes GM, Maguire SJ, Guida A, Synnott JM, Andes DR, Butler G, Dissection of the role Bcr1 in C. albicans and C. parapsilosis. PLoS One, 6(12), e28151, 2011.
(8)Ding C, Festa R, Chen YL, Espart A, Palacios Ò, Espín J, Capdevila M, Atrian S, Heitman J, Thiele DJ, Cryptococcus neoformans copper detoxification machinery is critical for fungal virulence. Cell Host & Microbe, 13(3), 265-276, 2013. (Recommended by Faculty of 1000 and Nature Reviews Microbiology)
(9)Palacios O, Espart A, Espín J,Ding C,Thiele DJ, Atrian S, Capdevila M, Full characterization of the Cu-, Zn-, and Cd-binding properties of CnMT1 and CnMT2, two metallothioneins of the pathogenic fungus Cryptococcus neoformans acting as virulence factors. Metallomics. 2013 Dec 6
(10)Ding C, Festa R, Sun T-S, Wang Z-Y, Iron and copper as virulence modulators in human fungal pathogens. Molecular Microbiology, doi:10.1111/mmi.12653,2014
(11)Ding C, Hu G, Jung WH, Kronstad JW, Essential metals in Cryptococcus neoformans: Acquisition and Regulation. Curr Fungal Infect Rep. 2014 (8):153-162
(12)Sun T-S, Ju X, Gao HL, Wang T, Thiele DJ, Li J-Y, Wang Z-Y, Ding C. Reciprocal functions of Cryptococcus neoformans copper homeostasis machinery during pulmonary infection and meningoencephalitis. Nature Communications, 5:5550, 2014 (Recommended by Nature Reviews Microbiology)
(13)Guo C, Zhang S, Li JY, Ding C, Yang ZH, Chai R, Wang X, Wang ZY. Chronic hyperglycemia induced via the heterozygous knockout of Pdx1 worsens neuropathological lesion in an Alzheimer mouse model. Scientific Reports. 2016 Jul 12;6:29396. doi: 10.1038/srep29396
(14)Tian B, Yan Q, Wang J, Ding C, Sai S. Enhanced antifungal activity of voriconazole-loaded nanostructured lipid carriers against Candida albicans with a dimorphic switching model. Int J Nanomedicine. 2017 Sep 26;12:7131-7141. Doi:10.2147/IJN.S145695
(15)Do E, Park S, Li M-H, Wang J-M, Ding C,Kronstad, JW, Jung, WH. The mitochondrial ABC transporter Atm1 plays a role in iron metabolism and virulence in the human fungal pathogen Cryptococcus neoformans. Medical Mycology. 2017. Myx073.
(16)Suo C-H, Ma L-J, Li H-L, Sun J-F, Li C, Lin M-H, Sun T-S, Du W, Li Y-J, Gao X-D, Meng Y, Sai S-S, Ding C. Investigation of Cryptococcus neoformans magnesium transporters reveals important role of vacuolar magnesium transporter in regulating fungal virulence factors. MicrobiologyOpen. 2017. DOI:10.1002/mbo3.564.
(17)Garcia-Santamarina S, Festa RA, Smith AD, Yu CH, Probst C, Ding C,Homer CM, Yin J, Noonan JP, Madhani H, Perfect JR, Thiele DJ. Genome-wide analysis of the regulation of Cu metabolism in Cryptococcus neoformans. Molecular Microbiology. 2018. Apr 2. doi: 10.1111/mmi.13960.
(18)李焱剑，高鑫迪，孟阳，丁辰.铜、铁离子代谢调节隐球菌致病力及宿主免疫的研究进展。Mycosystema(菌物学报). 2018 Oct 22, 37(10):1337-1348. (Invited review)
(19)Zhu Q, Xiahou J, Guo Y, Li H, Ding C, Wang J, Li X, Sun X, Li JG. Zn3Ga2Ge2O10: Cr3+ Uniform Microspheres: Template-Free Synthesis, Tunable Bandgap/Trap Depth, and In Vivo Rechargeable Near-Infrared-Persistent Luminescence. ACS Applied Bio Materials. 2018 Dec 28; 2(1): 577-87.
(20)Cao M, Li D, Lin Z, Niu C, Ding C. MiRNN: An Improved Prediction Model of MicroRNA Precursors Using Gated Recurrent Units. International Conference on Intelligent Computing 2018 Aug 15 (pp. 217-222). Springer, Cham.
(21)Li C, Li Y, Ding C. The Role of Copper Homeostasis at the Host-Pathogen Axis: From Bacteria to Fungi. International Journal of Molecular Science. 2019 Jan 5;20(1). Pii: E175. Doi:10.3390/ijms20010175. (Invited review)
(22)Li Y, Li H, Sui, M, Li M, Wang J, Meng Y, Sun T, Liang Q, Suo C, Gao X, Li C, Li Z, Du W, Zhang B, Sai S, Zhang Z, Ye J, Wang H, Yue S, Li J, Zhong M, Chen C, Qi S, Lu L, Li D, Ding C*. Fungal acetylome comparative analysis identifies an essential role of acetylation in human fungal pathogen virulence. Communications Biology. 2019, 2, 154.
(23)Hailong Li, Yanjian Li, Tianshu Sun, Wei Du, Chao Li, Chenhao Suo, Yang Meng, Qiaojing Liang, Tian Lan, Manli Zhong, Sheng Yang, Cheng Niu, Dancheng Li, Chen Ding. Unveil the transcriptional landscape at the Cryptococcus-host axis in mice and nonhuman primates. PLoS Neglected Tropical Diseases, 2019, 13(7): e0007566.
(24)Du, W., Li, H., Tian, B., Sai, S., Gao, Y., Lan, T., ... &Ding, C. (2019). Development of nose-to-brain delivery of ketoconazole by nanostructured lipid carriers against cryptococcal meningoencephalitis in mice. Colloids and Surfaces B: Biointerfaces, 183, 110446.
(25)XiuQingxiao, Li Dancheng, Li Hailong, Wang Ning, Ding Chen. Prediction Method for Lysine Acetylation Sites Based on LSTM Network，2019 IEEE 7th International Conference on Computer Science and Network Technology (ICCSNT), accept.
(26)Mao Lin, Zhenlei Liu, Gang Liu, Sen Zhao, Chao Li, Weisheng Chen, Zeynep Coban Akdemir, Jiachen Lin, Xiaofei Song, Shengru Wang, Qiming Xu, Yanxue Zhao, Lianlei Wang, Yuanqiang Zhang, Zihui Yan, Sen Liu, Jiaqi Liu, Yixin Chen, Xu Yang, Tianshu Sun, Xin-Zhuang Yang, Yuchen Niu, Xiaoxin Li, Wesley You, BintaoQiu, Chen Ding, Pengfei Liu, Shuyang Zhang, Claudia M. B. Carvalho, Jennifer E. Posey, GuixingQiu, JamesR. Lupski, Zhihong Wu, Jianguo Zhang, Nan Wu. (2019) Genetic and molecular mechanism for distinct clinical phenotypes conveyed by allelic truncating mutations implicated in FBN1. Molecular Genetics & Genomic Medicine, DOI:10.1002/mgg3.1023.
(27)Sarela Garcia-Santamarina, Corinna Probst, Chen Ding, Pamela Riggs-Gelasco, Steven Conklin, Katherine J. Franz, Lisa Kinch, Nick Grishin, Leila Lo Leggio, Katja Salomon Johansen and Dennis J. Thiele (2019). A Lytic Polysaccharide Monooxygenase family member functions in Cu+ import and fungal meningitis. Nature Chemical Biology, 16, 345-350, 2020
(28)Hailong Li, Yanjian Li, Tiabshu Sun, Wei Du, Zhijie Zhang, Dancheng Li and Chen Ding(2020). Integrative Proteome and Acetylome Analyses of Murine Responses to Cryptococcus neoformans Infection. Frontiers in Microbiology, 11:575. Doi 10.3389/fmicb.2020.00575, 2020 (In press)
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