luo, Ray - University of California, Irvine - Department of Molecular Biology and Biochemistry

研究领域

We use computational approaches to study biomolecular structures and functions. Our goal is to interpret the structural and functional information encoded in genomes and to understand life at the most fundamental level based on physical and chemical principles. Our current research effort focuses on developing reliable and efficient computational methods to study and predict structures, functions, and intermolecular interactions at atomic detail.

近期论文

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Synergistic Modification Induced Specific Recognition between Histone and TRIM24 via Fluctuation Correlation Network Analysis, J Zhang, H Luo, H Liu, W Ye, R Luo, HF Chen, Scientific Reports, 6: 24587, 2016 D. R. Jackson, S. S. Tu, M. C. Nguyen, J. F. Barajas, A. J. Schaub, D. Krug, D. Pistorius, R. Luo, R. Mu¨ller, and S.-C. Tsai, Structural Insights Into Anthranilate Priming During Type II Polyketide Biosynthesis, ACS Chem. Biol., 11:95-103, 2015. W. Ye, D. Ji, W. Wang, R. Luo, and H.-F. Chen, Test and Evaluation of ff99IDPs Force Field for Intrinsically Disordered Proteins, J. Chem. Inf. Model., 55:1021–1029, 2015. Z. Li, L. Xiao, Q. Cai, H. Zhao, and R. Luo, A Semi-implicit Augmented IIM for Navier-Stokes Equations with Open, Traction, or Free Boundary Conditions, J. Comp. Phys., 297:182–193, 2015. J. F. Barajas, R. M. Phelan, A. J. Schaub, J. T. Kliewer, P. J. Kelly, D. R. Jackson, R. Luo, J. D. Keasling, S.-C. Tsai, Comprehensive Analysis of the Terminal Myxalamid Reductase Domain for the Engineered Production of Primary Alcohols, Chem. & Biol., 22:1018–1029, 2015. W. M Botello-Smith and R. Luo, Applications of MMPBSA to Membrane Proteins I: Efficient Numerical Solutions of Periodic Poisson-Boltzmann Equation, J. Chem. Inf. Model., 55:2187-2199, 2015. W. Wang, W. Ye, C. Jiang, R. Luo, and H.F. Chen, New Force Field on Modeling Intrinsically Disordered Proteins, Chem. Biol. Drug Des., 84:253–269, 2014. L. Xiao, Q. Cai, Z. Li, H. Zhao, and . Luo, A Multi-Scale Method for Dynamics Simulation in Continuum Solvent Models I: Finite-Difference Algorithm for Navier-Stokes Equation, Chem. Phys. Lett. 616-617:67–74, 2014. L. Xiao, Q. Cai, X. Ye, J. Wang, and R. Luo, Electrostatics Forces in the Poisson-Boltzmann Systems, J. Chem. Phys., 139:094106, 2013. J. Wang, Q. Cai, X. Ye, and R. Luo, Reducing Grid-Dependence in Finite-Difference Poisson-Boltzmann Calculations, J. Chem. Theo. Comp., 8:2741–2751, 2012. J. Wang, P. Cieplak, Q. Cai, M. J. Hsieh, J. Wang, Y. Duan, R. Luo, Development of Polarizable Models for Molecular Mechanical Calculations III: Polarizable Water Models Conforming to Thole Polarization Screening Schemes, J. Phys. Chem., 116:7999–8008, 2012.